Click here to switch to the map view.

The map label for this gene is cmoB

Identifier: 209695351

GI number: 209695351

Start: 2018763

End: 2019737

Strand: Reverse

Name: cmoB

Synonym: VSAL_I1884

Alternate gene names: 209695351

Gene position: 2019737-2018763 (Counterclockwise)

Preceding gene: 209695352

Following gene: 209695350

Centisome position: 60.74

GC content: 41.03

Gene sequence:

>975_bases
ATGTTTAATTTTGCTAATTTTTATAAACTTATTGCTCAAGATACCATTCTTCAGCCTTGGCTAAACACCCTTCCCCAGCA
ATTAACCGATTGGCAAAATGCTGAGCATGGGGATATAGAACGCTGGCTTAAAGCGCTAAAAAAAATCCCTGAAGGCTGTG
CTGAAAACATTGATTTAAAAACGTCAGTTACGCTATCAAATAATAGCCCTTTGATTGATGGCGAACGTAAAAAACTAGAA
AGTTTATTACGCACCTTCCATCCATGGCGTAAAGGCCCGTTCACTGTTCATGACATTCATATCGACACTGAGTGGCGCTC
TGACTGGAAATGGGATCGTGTTCTACCTCATTTATCGCCATTAAAAAATCGATCTATCTTAGATGTCGGCTGTGGTAACG
GATATCATATGCTTCGCATGTTAGGAGAAGGGGCTCGTTTGTGTGTTGGTATCGATCCCTCTCACCTATTCTTAGTTCAG
TTTGAAGCCATTCGTAAATTAATGGGCAATGACCAACGAGCGCATTTATTACCTTTAGGGATCGAACAGCTTCCTGAATT
AAATGCGTTTGATACTGTATTTAGTATGGGCGTGCTGTACCACCGTCGTTCGCCTCTTGATCATCTTATTCTATTAAAAA
ATCAACTCGTCGCTGGCGGTGAGCTCGTTTTAGAAACCCTCGTTATTGATGGCGATGAAAACGCAGTCTTAATGCCAGTT
GATCGTTATGCTCAAATGCGTAACGTCTATTTCTTCCCATCAGCTAAAGCGTTAAAAGTATGGTTAGAAAGCGTCGGATT
TATTGACGTAAAAATTGTCGACGAGTGCGTAACAACAACAGGTGAACAACGCTCTACAGAATGGATGAAACACAATTCAT
TACCTGAGTATTTAGACCCTACGGACTCATCAAAAACAATTGAAGGCCACCCAGCTCCTAAGCGTGCAATTTTAATTGCT
AGAAAACCTGACTAA

Upstream 100 bases:

>100_bases
GAAGTCTGGTTCCAATGCTTTAATTTTGGCTCAATGTTCGCGATCAAATAATCGATATAAATCCTTTATTTTCACTTATT
AATTAACTAAAGATATTTCA

Downstream 100 bases:

>100_bases
ACGCTAACATTGTGGGGCTATCCGCCCCTATTTATTATCGTTACTATGCACATGTTAATTTAACTCAACGGAACATAAAA
TGATCCAACGAATTCTACCT

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MFNFANFYKLIAQDTILQPWLNTLPQQLTDWQNAEHGDIERWLKALKKIPEGCAENIDLKTSVTLSNNSPLIDGERKKLE
SLLRTFHPWRKGPFTVHDIHIDTEWRSDWKWDRVLPHLSPLKNRSILDVGCGNGYHMLRMLGEGARLCVGIDPSHLFLVQ
FEAIRKLMGNDQRAHLLPLGIEQLPELNAFDTVFSMGVLYHRRSPLDHLILLKNQLVAGGELVLETLVIDGDENAVLMPV
DRYAQMRNVYFFPSAKALKVWLESVGFIDVKIVDECVTTTGEQRSTEWMKHNSLPEYLDPTDSSKTIEGHPAPKRAILIA
RKPD

Sequences:

>Translated_324_residues
MFNFANFYKLIAQDTILQPWLNTLPQQLTDWQNAEHGDIERWLKALKKIPEGCAENIDLKTSVTLSNNSPLIDGERKKLE
SLLRTFHPWRKGPFTVHDIHIDTEWRSDWKWDRVLPHLSPLKNRSILDVGCGNGYHMLRMLGEGARLCVGIDPSHLFLVQ
FEAIRKLMGNDQRAHLLPLGIEQLPELNAFDTVFSMGVLYHRRSPLDHLILLKNQLVAGGELVLETLVIDGDENAVLMPV
DRYAQMRNVYFFPSAKALKVWLESVGFIDVKIVDECVTTTGEQRSTEWMKHNSLPEYLDPTDSSKTIEGHPAPKRAILIA
RKPD
>Mature_324_residues
MFNFANFYKLIAQDTILQPWLNTLPQQLTDWQNAEHGDIERWLKALKKIPEGCAENIDLKTSVTLSNNSPLIDGERKKLE
SLLRTFHPWRKGPFTVHDIHIDTEWRSDWKWDRVLPHLSPLKNRSILDVGCGNGYHMLRMLGEGARLCVGIDPSHLFLVQ
FEAIRKLMGNDQRAHLLPLGIEQLPELNAFDTVFSMGVLYHRRSPLDHLILLKNQLVAGGELVLETLVIDGDENAVLMPV
DRYAQMRNVYFFPSAKALKVWLESVGFIDVKIVDECVTTTGEQRSTEWMKHNSLPEYLDPTDSSKTIEGHPAPKRAILIA
RKPD

Specific function: Catalyzes the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at position 34 in tRNA

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. CmoB family

Homologues:

Organism=Escherichia coli, GI1788178, Length=324, Percent_Identity=65.7407407407407, Blast_Score=438, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CMOB_ALISL (B6EGI9)

Other databases:

- EMBL:   FM178379
- RefSeq:   YP_002263280.1
- ProteinModelPortal:   B6EGI9
- GeneID:   6987434
- GenomeReviews:   FM178379_GR
- KEGG:   vsa:VSAL_I1884
- HOGENOM:   HBG296882
- OMA:   DVIFCLG
- ProtClustDB:   PRK15068
- HAMAP:   MF_01590
- InterPro:   IPR010017
- TIGRFAMs:   TIGR00452

Pfam domain/function: PF08003 Methyltransf_9

EC number: NA

Molecular weight: Translated: 37077; Mature: 37077

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNFANFYKLIAQDTILQPWLNTLPQQLTDWQNAEHGDIERWLKALKKIPEGCAENIDLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
TSVTLSNNSPLIDGERKKLESLLRTFHPWRKGPFTVHDIHIDTEWRSDWKWDRVLPHLSP
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCC
LKNRSILDVGCGNGYHMLRMLGEGARLCVGIDPSHLFLVQFEAIRKLMGNDQRAHLLPLG
CCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEECC
IEQLPELNAFDTVFSMGVLYHRRSPLDHLILLKNQLVAGGELVLETLVIDGDENAVLMPV
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEEEEEEECCCCEEEEEH
DRYAQMRNVYFFPSAKALKVWLESVGFIDVKIVDECVTTTGEQRSTEWMKHNSLPEYLDP
HHHHHHCCEEECCCHHHHHHHHHHCCEEEEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCC
TDSSKTIEGHPAPKRAILIARKPD
CCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MFNFANFYKLIAQDTILQPWLNTLPQQLTDWQNAEHGDIERWLKALKKIPEGCAENIDLK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
TSVTLSNNSPLIDGERKKLESLLRTFHPWRKGPFTVHDIHIDTEWRSDWKWDRVLPHLSP
EEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCC
LKNRSILDVGCGNGYHMLRMLGEGARLCVGIDPSHLFLVQFEAIRKLMGNDQRAHLLPLG
CCCCCEEEECCCCCHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCEEEEECC
IEQLPELNAFDTVFSMGVLYHRRSPLDHLILLKNQLVAGGELVLETLVIDGDENAVLMPV
HHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEEEEEEEEECCCCEEEEEH
DRYAQMRNVYFFPSAKALKVWLESVGFIDVKIVDECVTTTGEQRSTEWMKHNSLPEYLDP
HHHHHHCCEEECCCHHHHHHHHHHCCEEEEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCC
TDSSKTIEGHPAPKRAILIARKPD
CCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA