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The map label for this gene is ydjN [H]

Identifier: 209695286

GI number: 209695286

Start: 1935733

End: 1937103

Strand: Reverse

Name: ydjN [H]

Synonym: VSAL_I1813

Alternate gene names: 209695286

Gene position: 1937103-1935733 (Counterclockwise)

Preceding gene: 209695288

Following gene: 209695281

Centisome position: 58.26

GC content: 42.82

Gene sequence:

>1371_bases
ATGTCATTAGCCGTTATCATCAATTTGATCGTCTTTATCGGTCTTATCTTTTTTCTTAATACGCAACAGCGTAAAGAATA
CACCTTATCTCGCCTTGTGCTTATTGGCTTAATTGCGGGTAGCGTTTATGGGTTAGCACTTCAACTTATTCATGGTGAAG
GCAGTGCCATCATTAAGACCACGCTTGATTGGGTAAATGTTGTTGGCAGCGGTTATGTTGGCTTACTAAAAATGGTTATC
ATGCCATTAGTATTAGTCTCTATGTTTTCTGCGGTAGTGAAACTGGATAAATCAGGCTCTTTAGGTAAGATCAGTGGCGT
CACGATTGGCGTACTTCTATTTACCACTATGATTTCTGCCCTTATCGGTATCGGGGTAACTCAAGCCTTTGGTTTAACAG
CAGCAGGCTTAACAGAAGGCGTTCGTGAAACCGCTCGCGTTGCCGTATTAGAATCTCGCATGAGCAGCGTCAGTGATTTA
ACCATCCCTCAAATGTTAGTTAGTTTTATTCCCACCAATCCTTTTGCCGATTTAACTGGCACTCGCTCAACCTCTATTAT
TGCCGTCGTCATTTTTGCAATTTTAGCGGGTATTGCTGCGCGTAAAGTCAGCCAAGAAAAAGAAGAACTCGCCGGACCAA
TCAATACGTTTGTTGAAGTTGCACAGTCAATAGTCATGCGTTTAGTTAAAATGATCATGGCACTAACACCTTACGGTATT
TTAGCGTTATTAACTAAAGTCGTCGCAACATCAAACGCTGCAGATATTTTAAACTTACTTGGTTTTATCGTGGCATCTTA
TGTCGCGATCTTATTGATGTTTGCAGTACACGGTTTATTAGTTTCTTTTGTTGGCGTAAACCCAATTGATTACTTCAAGA
AAATTTGGCCTGTATTAACATTTGCATTCAGCTCTCGCAGCTCAGCGGCAACGATTCCATTGAATGTACAAGCTCAAATT
ACTAAGCTGCGCGTCCCGCCTGCGATTGCAAATTTATCAGCTACGTTTGGTGCAACGATTGGCCAAAATGGGTGTGCAGG
TATCTACCCTGCAATGCTAGCGGTAATGGTTGCACCAACAATGGGGATTCCAATTGACGCTCACTTTATTCTTTCTCTGG
TTGCGATTATTACTGTCAGTTCATTTGGTATTGCAGGTGTCGGTGGCGGTGCAACATTTGCGGCATTAATCGTTCTTCCT
GCTATGGGCTTACCTGTAACCATCGCCGCACTACTTATTTCGATTGAGCCTCTTATTGATATGGCTCGTACTGCACTTAA
CGTCAGTGGCGCGATGACAGCCGGAACCATCACAAGCCGAGTACTTGGTGAAAAAAGTACCGATGAACAAGTAGAAAGCG
CACAAGTGTAA

Upstream 100 bases:

>100_bases
TTATCATACTGAGTAGCTTATCGTTACTATGATTTTAAATATAAAGAGCTTGTGTCAAATCGACAAAATAACGAGCACAT
AAATAAACAGGAAAAGCAGT

Downstream 100 bases:

>100_bases
TTCTAAATAGCCCCATTCATTTTCAATAGGAAACCTGCGGGCTTCCTATTTTTTTTGCTTAAAAAACAATAACCTTTCAT
GACATAAAAGTGACATATGG

Product: sodium/dicarboxylate symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MSLAVIINLIVFIGLIFFLNTQQRKEYTLSRLVLIGLIAGSVYGLALQLIHGEGSAIIKTTLDWVNVVGSGYVGLLKMVI
MPLVLVSMFSAVVKLDKSGSLGKISGVTIGVLLFTTMISALIGIGVTQAFGLTAAGLTEGVRETARVAVLESRMSSVSDL
TIPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILAGIAARKVSQEKEELAGPINTFVEVAQSIVMRLVKMIMALTPYGI
LALLTKVVATSNAADILNLLGFIVASYVAILLMFAVHGLLVSFVGVNPIDYFKKIWPVLTFAFSSRSSAATIPLNVQAQI
TKLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDAHFILSLVAIITVSSFGIAGVGGGATFAALIVLP
AMGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGEKSTDEQVESAQV

Sequences:

>Translated_456_residues
MSLAVIINLIVFIGLIFFLNTQQRKEYTLSRLVLIGLIAGSVYGLALQLIHGEGSAIIKTTLDWVNVVGSGYVGLLKMVI
MPLVLVSMFSAVVKLDKSGSLGKISGVTIGVLLFTTMISALIGIGVTQAFGLTAAGLTEGVRETARVAVLESRMSSVSDL
TIPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILAGIAARKVSQEKEELAGPINTFVEVAQSIVMRLVKMIMALTPYGI
LALLTKVVATSNAADILNLLGFIVASYVAILLMFAVHGLLVSFVGVNPIDYFKKIWPVLTFAFSSRSSAATIPLNVQAQI
TKLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDAHFILSLVAIITVSSFGIAGVGGGATFAALIVLP
AMGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGEKSTDEQVESAQV
>Mature_455_residues
SLAVIINLIVFIGLIFFLNTQQRKEYTLSRLVLIGLIAGSVYGLALQLIHGEGSAIIKTTLDWVNVVGSGYVGLLKMVIM
PLVLVSMFSAVVKLDKSGSLGKISGVTIGVLLFTTMISALIGIGVTQAFGLTAAGLTEGVRETARVAVLESRMSSVSDLT
IPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILAGIAARKVSQEKEELAGPINTFVEVAQSIVMRLVKMIMALTPYGIL
ALLTKVVATSNAADILNLLGFIVASYVAILLMFAVHGLLVSFVGVNPIDYFKKIWPVLTFAFSSRSSAATIPLNVQAQIT
KLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDAHFILSLVAIITVSSFGIAGVGGGATFAALIVLPA
MGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGEKSTDEQVESAQV

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI5032093, Length=405, Percent_Identity=30.1234567901235, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI223468566, Length=298, Percent_Identity=31.5436241610738, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI223468564, Length=280, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI21314632, Length=441, Percent_Identity=26.3038548752834, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI40254478, Length=448, Percent_Identity=24.3303571428571, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI194239697, Length=304, Percent_Identity=25.6578947368421, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI66773030, Length=422, Percent_Identity=24.4075829383886, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI169790839, Length=278, Percent_Identity=25.8992805755396, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1788024, Length=457, Percent_Identity=58.6433260393873, Blast_Score=489, Evalue=1e-139,
Organism=Escherichia coli, GI1790514, Length=433, Percent_Identity=23.3256351039261, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1789947, Length=389, Percent_Identity=23.1362467866324, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1789473, Length=262, Percent_Identity=28.6259541984733, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983106, Length=415, Percent_Identity=25.0602409638554, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71983099, Length=415, Percent_Identity=25.0602409638554, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI193206505, Length=455, Percent_Identity=23.5164835164835, Blast_Score=99, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71996953, Length=462, Percent_Identity=22.5108225108225, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI193206654, Length=422, Percent_Identity=24.4075829383886, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17541374, Length=430, Percent_Identity=25.3488372093023, Blast_Score=89, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17537407, Length=398, Percent_Identity=23.8693467336683, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24583025, Length=434, Percent_Identity=22.8110599078341, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17137668, Length=434, Percent_Identity=22.8110599078341, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24583023, Length=434, Percent_Identity=22.8110599078341, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 47566; Mature: 47434

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure 
SLAVIINLIVFIGLIFFLNTQQRKEYTLSRLVLIGLIAGSVYGLALQLIHGEGSAIIKT
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHH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HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]