| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695266
Identifier: 209695266
GI number: 209695266
Start: 1907270
End: 1907986
Strand: Reverse
Name: 209695266
Synonym: VSAL_I1789
Alternate gene names: NA
Gene position: 1907986-1907270 (Counterclockwise)
Preceding gene: 209695267
Following gene: 209695265
Centisome position: 57.38
GC content: 41.42
Gene sequence:
>717_bases ATGGCAAAAGAGAAAGAGAAAGAAATGATTCAACGAGAAAGTTATTGCGTTTACATTGAACGTACTTCTCGCAGAAAAAC CGCGTCCATTAAAGTGGAAGAGGGAAAGGTCATTGTCGTTGTGCCAAGAAAGTTAGATCTTGAACGCATAGAAAAGTTAA TTACAGATAAGCACCAGTGGATTATCGAAAAGATCGCGTTAAATCAGCATGCGACACCGATGAATGCGAGAGAGTATGTG TCAGGTGAGGCTTTCCCTTACCTTGGGCGTAATTATCGCTTAAAAGTGGTGGCAGGTGATCTGACTCAAACCAAATTGAT TGCAGGGCGTATTCTCGTCACAGTGCCTGACCCTAAGCATCAGCCGCAGTATATTAATCGCGCCTTGGTGAATTGGTATA AGCGGAATGCAGAAAAGAAAATTCGTGAAAAAGTTCACCGCTATGCGCCGATGGTGGGGGTTGAAACTGCGGTTATTCGT ATTAAAGAATTTAAAAGCCGTTGGGGAAGTTGTACGCCTTACGGAGATTTAGAATTTAATTGGTTAATCATGCAAGCGCC AAATCGCGTGGTGGATTATGTGGTGATTCATGAACTGTGTCATCTCATTCATCACGATCATTCACCTCAGTTTTGGAAAG AAGTTGAAAGAGTGATGCCTGATTTTCAAGAGCAAAAATTATGGCTAAAAAACAATGGGTATTCATTATCCGTTTAA
Upstream 100 bases:
>100_bases CGTGCTGTTCTTGATCAACCATTTGGTGATAAAGCTTTGGTAACGGTTCTACAAGATCGCTTTATGGATTTGGCGAAAAC CAAGTTCGGAAACAAATAGC
Downstream 100 bases:
>100_bases TTTATTGTCTTTTTTATCAATTAATTAACGTATTCTCTTCTTTTTTGTATCCACCTACCTACAAAGTATGATGAATATCT CGATTTTACTGTAACGTATG
Product: hypothetical protein
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Zinc Metallopeptidase; Zinc Metallopeptidases-Like Protein; Metal-Dependent Hydrolase Family Protein; Zinc Metallopeptidase-Like Protein; Hydrolase; Zinc Metallopeptidase Protein; Protease
Number of amino acids: Translated: 238; Mature: 237
Protein sequence:
>238_residues MAKEKEKEMIQRESYCVYIERTSRRKTASIKVEEGKVIVVVPRKLDLERIEKLITDKHQWIIEKIALNQHATPMNAREYV SGEAFPYLGRNYRLKVVAGDLTQTKLIAGRILVTVPDPKHQPQYINRALVNWYKRNAEKKIREKVHRYAPMVGVETAVIR IKEFKSRWGSCTPYGDLEFNWLIMQAPNRVVDYVVIHELCHLIHHDHSPQFWKEVERVMPDFQEQKLWLKNNGYSLSV
Sequences:
>Translated_238_residues MAKEKEKEMIQRESYCVYIERTSRRKTASIKVEEGKVIVVVPRKLDLERIEKLITDKHQWIIEKIALNQHATPMNAREYV SGEAFPYLGRNYRLKVVAGDLTQTKLIAGRILVTVPDPKHQPQYINRALVNWYKRNAEKKIREKVHRYAPMVGVETAVIR IKEFKSRWGSCTPYGDLEFNWLIMQAPNRVVDYVVIHELCHLIHHDHSPQFWKEVERVMPDFQEQKLWLKNNGYSLSV >Mature_237_residues AKEKEKEMIQRESYCVYIERTSRRKTASIKVEEGKVIVVVPRKLDLERIEKLITDKHQWIIEKIALNQHATPMNAREYVS GEAFPYLGRNYRLKVVAGDLTQTKLIAGRILVTVPDPKHQPQYINRALVNWYKRNAEKKIREKVHRYAPMVGVETAVIRI KEFKSRWGSCTPYGDLEFNWLIMQAPNRVVDYVVIHELCHLIHHDHSPQFWKEVERVMPDFQEQKLWLKNNGYSLSV
Specific function: Unknown
COG id: COG1451
COG function: function code R; Predicted metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28123; Mature: 27992
Theoretical pI: Translated: 9.93; Mature: 9.93
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKEKEKEMIQRESYCVYIERTSRRKTASIKVEEGKVIVVVPRKLDLERIEKLITDKHQW CCCHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHCCHHHH IIEKIALNQHATPMNAREYVSGEAFPYLGRNYRLKVVAGDLTQTKLIAGRILVTVPDPKH HHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCHHHHEEECEEEEECCCCCC QPQYINRALVNWYKRNAEKKIREKVHRYAPMVGVETAVIRIKEFKSRWGSCTPYGDLEFN CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE WLIMQAPNRVVDYVVIHELCHLIHHDHSPQFWKEVERVMPDFQEQKLWLKNNGYSLSV EEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCEEEEECCCEEECC >Mature Secondary Structure AKEKEKEMIQRESYCVYIERTSRRKTASIKVEEGKVIVVVPRKLDLERIEKLITDKHQW CCHHHHHHHHHCCEEEEEEECCCCCEEEEEEECCEEEEEECCCCCHHHHHHHHCCHHHH IIEKIALNQHATPMNAREYVSGEAFPYLGRNYRLKVVAGDLTQTKLIAGRILVTVPDPKH HHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEECCCHHHHEEECEEEEECCCCCC QPQYINRALVNWYKRNAEKKIREKVHRYAPMVGVETAVIRIKEFKSRWGSCTPYGDLEFN CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEE WLIMQAPNRVVDYVVIHELCHLIHHDHSPQFWKEVERVMPDFQEQKLWLKNNGYSLSV EEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHCEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA