| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209695263
Identifier: 209695263
GI number: 209695263
Start: 1903553
End: 1904806
Strand: Reverse
Name: 209695263
Synonym: VSAL_I1786
Alternate gene names: NA
Gene position: 1904806-1903553 (Counterclockwise)
Preceding gene: 209695264
Following gene: 209695262
Centisome position: 57.28
GC content: 41.79
Gene sequence:
>1254_bases ATGAACCACGTCAACATTACTCGGAATTTACTTACTGCATCACTCTTTGTTTTACCTACTTTTTCCTATGCAGCAACTCA ATCTGAAGTAGTCGAACATTATGCAGACATCGCTCATGCGGTTTATAGCGATGCATTAACCACTGCACAATCGCTTGATA CCACGTTAAATGCTTTTTTAGCGAACCCTTCAGAGAAAACACTAGAGCAAGCCAAAATCGCATGGAAAGCCGCTCGTGTT CCTTACCAACAATCCGAAGTTTTCCGTTTTGGTAACCCAGTGGTTGATGATTGGGAAGGGCAATTAAATGCATGGCCACT TGATGAAGGGTTGATTGATTATGTGGCTGATGATTACCAATACGAACTAGGTAATGATGGCGCCAAAGCAAATATTGTCT CTTCTAAAAGCATTAAAATCGGAGCAGAAACAATTGATGTTACCAACATTAAAGCCGATCATTTAGCTGCTCTTAATGAG TTAGGTGGATCTGAGGCGAATGTAGCAACTGGTTACCATGCGATTGAATTTCTTCTATGGGGTCAAGATCTCAATGGAAC GAATGCCGGAGCTGGTGAGCGTCCTTATACGGATTATGCCATCGGTTCGGCATGTACGAACGGTAATTGTGAGCGTCGTG CTGAATATTTAAAAGCAGCGTCTGAGTTATTGATCAGTGATTTGTCTTGGATGGAGAAGCAGTGGAAAGAAGGCGAGACA AATTACCGAGCAGAACTACTGGAAGAGTCTTCAAAGCAAGGTCTTCGTAAAATGCTATTTGGTATGGGCTCTTTGTCTTT AGGTGAGCTTGCAGGGGAGCGTATGAAGGTAGCATTAGAGGCTAACTCGACAGAAGATGAGCATGATTGTTTTTCTGATA ATACGCATAACTCTCATTATTATAATGAACAAGGCATCTACAATGTTTATACCGGTACATACAAACGTACGGATGGAACA ATATTAGCAGGCCCTAGTATTCATGAATTGGTGGCTCAAAAAGACAAACAAGCGGCCAAAGAGATCCAACAACAGTTTGA TCAAGCTCGCGAGCAAGTGAAAACATTGGTGATTTCTGCAGAAGAAAACAATCAACATTTTGATCAACTCATTGCTGCAA ATAATGCGGCAGGGAATGCATTGGTTAATCAATCGATTATGGCATTAGTGACTCAAACGGCGTCGATTGAGCGTGCGGCT AATATCATTGGCATTACAAGCTTGAATCCTGATACCGCGGATCATGAGTTTTAA
Upstream 100 bases:
>100_bases TTTTTGGTATATTGCGCAAATAACAATAATTATCATTAATACTTCCTAACAAGAAAGGCAGGTTAATGACTAAAATTAAT TTGCTCAACAAGGATGATTT
Downstream 100 bases:
>100_bases TTTACGACTCTTTATTCGGTAACGTTGTTCCTAGGCTCAATCACTTTTTTTCCCCGAGAAAGTGATTGAGCCGTTTTTCG TTTAACCATTGGTTAATTAT
Product: iron-regulated protein
Products: NA
Alternate protein names: Iron-Regulated Protein A; Insulin-Cleaving Metalloproteinase Outer Membrane Protein; Peptidase; Imelysin; Lipoprotein; Peptidase Imelysin Family; Insulin-Cleaving Metalloproteinase Outer Membrane; Iron-Regulated Lipoprotein; Imelysin Family; Exported Protein
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MNHVNITRNLLTASLFVLPTFSYAATQSEVVEHYADIAHAVYSDALTTAQSLDTTLNAFLANPSEKTLEQAKIAWKAARV PYQQSEVFRFGNPVVDDWEGQLNAWPLDEGLIDYVADDYQYELGNDGAKANIVSSKSIKIGAETIDVTNIKADHLAALNE LGGSEANVATGYHAIEFLLWGQDLNGTNAGAGERPYTDYAIGSACTNGNCERRAEYLKAASELLISDLSWMEKQWKEGET NYRAELLEESSKQGLRKMLFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDNTHNSHYYNEQGIYNVYTGTYKRTDGT ILAGPSIHELVAQKDKQAAKEIQQQFDQAREQVKTLVISAEENNQHFDQLIAANNAAGNALVNQSIMALVTQTASIERAA NIIGITSLNPDTADHEF
Sequences:
>Translated_417_residues MNHVNITRNLLTASLFVLPTFSYAATQSEVVEHYADIAHAVYSDALTTAQSLDTTLNAFLANPSEKTLEQAKIAWKAARV PYQQSEVFRFGNPVVDDWEGQLNAWPLDEGLIDYVADDYQYELGNDGAKANIVSSKSIKIGAETIDVTNIKADHLAALNE LGGSEANVATGYHAIEFLLWGQDLNGTNAGAGERPYTDYAIGSACTNGNCERRAEYLKAASELLISDLSWMEKQWKEGET NYRAELLEESSKQGLRKMLFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDNTHNSHYYNEQGIYNVYTGTYKRTDGT ILAGPSIHELVAQKDKQAAKEIQQQFDQAREQVKTLVISAEENNQHFDQLIAANNAAGNALVNQSIMALVTQTASIERAA NIIGITSLNPDTADHEF >Mature_417_residues MNHVNITRNLLTASLFVLPTFSYAATQSEVVEHYADIAHAVYSDALTTAQSLDTTLNAFLANPSEKTLEQAKIAWKAARV PYQQSEVFRFGNPVVDDWEGQLNAWPLDEGLIDYVADDYQYELGNDGAKANIVSSKSIKIGAETIDVTNIKADHLAALNE LGGSEANVATGYHAIEFLLWGQDLNGTNAGAGERPYTDYAIGSACTNGNCERRAEYLKAASELLISDLSWMEKQWKEGET NYRAELLEESSKQGLRKMLFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDNTHNSHYYNEQGIYNVYTGTYKRTDGT ILAGPSIHELVAQKDKQAAKEIQQQFDQAREQVKTLVISAEENNQHFDQLIAANNAAGNALVNQSIMALVTQTASIERAA NIIGITSLNPDTADHEF
Specific function: Unknown
COG id: COG3487
COG function: function code P; Uncharacterized iron-regulated protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45818; Mature: 45818
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHVNITRNLLTASLFVLPTFSYAATQSEVVEHYADIAHAVYSDALTTAQSLDTTLNAFL CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANPSEKTLEQAKIAWKAARVPYQQSEVFRFGNPVVDDWEGQLNAWPLDEGLIDYVADDYQ CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCE YELGNDGAKANIVSSKSIKIGAETIDVTNIKADHLAALNELGGSEANVATGYHAIEFLLW EECCCCCCCEEEEECCCEEECCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHEEEEEE GQDLNGTNAGAGERPYTDYAIGSACTNGNCERRAEYLKAASELLISDLSWMEKQWKEGET CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NYRAELLEESSKQGLRKMLFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDNTHNSHY HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCE YNEQGIYNVYTGTYKRTDGTILAGPSIHELVAQKDKQAAKEIQQQFDQAREQVKTLVISA ECCCCCEEEEECEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC EENNQHFDQLIAANNAAGNALVNQSIMALVTQTASIERAANIIGITSLNPDTADHEF CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC >Mature Secondary Structure MNHVNITRNLLTASLFVLPTFSYAATQSEVVEHYADIAHAVYSDALTTAQSLDTTLNAFL CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANPSEKTLEQAKIAWKAARVPYQQSEVFRFGNPVVDDWEGQLNAWPLDEGLIDYVADDYQ CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCE YELGNDGAKANIVSSKSIKIGAETIDVTNIKADHLAALNELGGSEANVATGYHAIEFLLW EECCCCCCCEEEEECCCEEECCCEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHEEEEEE GQDLNGTNAGAGERPYTDYAIGSACTNGNCERRAEYLKAASELLISDLSWMEKQWKEGET CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC NYRAELLEESSKQGLRKMLFGMGSLSLGELAGERMKVALEANSTEDEHDCFSDNTHNSHY HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCE YNEQGIYNVYTGTYKRTDGTILAGPSIHELVAQKDKQAAKEIQQQFDQAREQVKTLVISA ECCCCCEEEEECEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEC EENNQHFDQLIAANNAAGNALVNQSIMALVTQTASIERAANIIGITSLNPDTADHEF CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA