| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
Click here to switch to the map view.
The map label for this gene is 209695120
Identifier: 209695120
GI number: 209695120
Start: 1726446
End: 1727318
Strand: Reverse
Name: 209695120
Synonym: VSAL_I1619
Alternate gene names: NA
Gene position: 1727318-1726446 (Counterclockwise)
Preceding gene: 209695123
Following gene: 209695116
Centisome position: 51.95
GC content: 40.32
Gene sequence:
>873_bases ATGCTAACTAAACTTCGTGCAGAACCTGTTTTAATTATAACCACTCTTTTAGCTGGCGCTGGCTGGGTTTTTTCAAAAGA AGCAATTCAAGAGTTACCTCCATTTGCTTTTATTGGCATTCGTTTTGTCATGGCCTCACTGTGTTTATTGCCATTTTGTT TTAGTGCCTTGAAAAAAGCATTATGGCAAGATTGTCTTCGTTCTATGGGGGTTGGCGTATTACTTTCTTCAGCCTTATTT TGTTGGATACATGCAATATCAATCAGCGACACTTTAGGTGAAGGGGCATTTATTATGAGCCTCTCTATGCTATTTGTTCC TTTACTTGCTTGGCCACTGTTTGGTTCTAGGCCACCACGAGCATTTTGGTTCTCTTTGCCAATTGCTATTTCTGGCCTGT TCTTATTAGCATGGAATGACGGATGGAATGTATCGGCAAGTCAAATATGGTTTATCTGTGCAGCAATAGGACTTGCGACG CATTTTAATTTTAACAGTAAGTATTCCGCCAGTTTACCGACGATTTTATTAACGACATTACAATTATTTACGGTTGGTTG TTTGGGTGTCGTGTTATCACTGTTATCAGAAACATGGCCACAAGAGGTGAGTGTAATTACGTGGAAGTGGGTCGTCTTAA GTGTGTTACTTGCAACCAGTCTGCGCTATTTATTGCAAACGATAGGACAGAAGTGGGTAACACCAACCAATGCTGCGATC TTAATGTTACTTGAACCTATTTGGACTATGCTACTCAGTGTTTGGTTGTATGATGAATCGATGCCACTGAATAAACTGGT TGGCTGTGGTTTATTGCTGCTGTCTTTGGTTTTCTATCGCTTTAGCCAAGTGAGGCATAGATTACGAACTTAG
Upstream 100 bases:
>100_bases TAAAATACTCATTTTAATACCATATGGATATATGGATATATGGTAAAGGCGAAATCTTCATTCTCGAAAACTTATCATTA ACTACTTATTAAGCCCTTTT
Downstream 100 bases:
>100_bases TAGTAAGTCTTTGGGCTGTAATAAAATATGACTAACCCAAATACCTTTTTTATATGTGATTTTTACTTATGAGTATGGTT TAACTAAGCTGAGTCACGAG
Product: integral membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT
Sequences:
>Translated_290_residues MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT >Mature_290_residues MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32381; Mature: 32381
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LWQDCLRSMGVGVLLSSALFCWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC AFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLATHFNFNSKYSASLPTILLTTL HHEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH QLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKA CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LWQDCLRSMGVGVLLSSALFCWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPR HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC AFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLATHFNFNSKYSASLPTILLTTL HHEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH QLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA