Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209695120

Identifier: 209695120

GI number: 209695120

Start: 1726446

End: 1727318

Strand: Reverse

Name: 209695120

Synonym: VSAL_I1619

Alternate gene names: NA

Gene position: 1727318-1726446 (Counterclockwise)

Preceding gene: 209695123

Following gene: 209695116

Centisome position: 51.95

GC content: 40.32

Gene sequence:

>873_bases
ATGCTAACTAAACTTCGTGCAGAACCTGTTTTAATTATAACCACTCTTTTAGCTGGCGCTGGCTGGGTTTTTTCAAAAGA
AGCAATTCAAGAGTTACCTCCATTTGCTTTTATTGGCATTCGTTTTGTCATGGCCTCACTGTGTTTATTGCCATTTTGTT
TTAGTGCCTTGAAAAAAGCATTATGGCAAGATTGTCTTCGTTCTATGGGGGTTGGCGTATTACTTTCTTCAGCCTTATTT
TGTTGGATACATGCAATATCAATCAGCGACACTTTAGGTGAAGGGGCATTTATTATGAGCCTCTCTATGCTATTTGTTCC
TTTACTTGCTTGGCCACTGTTTGGTTCTAGGCCACCACGAGCATTTTGGTTCTCTTTGCCAATTGCTATTTCTGGCCTGT
TCTTATTAGCATGGAATGACGGATGGAATGTATCGGCAAGTCAAATATGGTTTATCTGTGCAGCAATAGGACTTGCGACG
CATTTTAATTTTAACAGTAAGTATTCCGCCAGTTTACCGACGATTTTATTAACGACATTACAATTATTTACGGTTGGTTG
TTTGGGTGTCGTGTTATCACTGTTATCAGAAACATGGCCACAAGAGGTGAGTGTAATTACGTGGAAGTGGGTCGTCTTAA
GTGTGTTACTTGCAACCAGTCTGCGCTATTTATTGCAAACGATAGGACAGAAGTGGGTAACACCAACCAATGCTGCGATC
TTAATGTTACTTGAACCTATTTGGACTATGCTACTCAGTGTTTGGTTGTATGATGAATCGATGCCACTGAATAAACTGGT
TGGCTGTGGTTTATTGCTGCTGTCTTTGGTTTTCTATCGCTTTAGCCAAGTGAGGCATAGATTACGAACTTAG

Upstream 100 bases:

>100_bases
TAAAATACTCATTTTAATACCATATGGATATATGGATATATGGTAAAGGCGAAATCTTCATTCTCGAAAACTTATCATTA
ACTACTTATTAAGCCCTTTT

Downstream 100 bases:

>100_bases
TAGTAAGTCTTTGGGCTGTAATAAAATATGACTAACCCAAATACCTTTTTTATATGTGATTTTTACTTATGAGTATGGTT
TAACTAAGCTGAGTCACGAG

Product: integral membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF
CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT
HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI
LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT

Sequences:

>Translated_290_residues
MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF
CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT
HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI
LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT
>Mature_290_residues
MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKALWQDCLRSMGVGVLLSSALF
CWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPRAFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLAT
HFNFNSKYSASLPTILLTTLQLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI
LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32381; Mature: 32381

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKA
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LWQDCLRSMGVGVLLSSALFCWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
AFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLATHFNFNSKYSASLPTILLTTL
HHEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTKLRAEPVLIITTLLAGAGWVFSKEAIQELPPFAFIGIRFVMASLCLLPFCFSALKKA
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LWQDCLRSMGVGVLLSSALFCWIHAISISDTLGEGAFIMSLSMLFVPLLAWPLFGSRPPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC
AFWFSLPIAISGLFLLAWNDGWNVSASQIWFICAAIGLATHFNFNSKYSASLPTILLTTL
HHEEEHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLFTVGCLGVVLSLLSETWPQEVSVITWKWVVLSVLLATSLRYLLQTIGQKWVTPTNAAI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LMLLEPIWTMLLSVWLYDESMPLNKLVGCGLLLLSLVFYRFSQVRHRLRT
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA