Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is ygjV [C]

Identifier: 209695099

GI number: 209695099

Start: 1703556

End: 1704059

Strand: Reverse

Name: ygjV [C]

Synonym: VSAL_I1596

Alternate gene names: 209695099

Gene position: 1704059-1703556 (Counterclockwise)

Preceding gene: 209695100

Following gene: 209695097

Centisome position: 51.25

GC content: 32.54

Gene sequence:

>504_bases
ATGTCATTATTTTTTATTTCTCAAGTATTAGTGGCAATTGCTATCATTTTCGATTTGATGTCTTTTCAGTTTAAAGAAAG
AAAAAGCATTGTTGCTTGTTTGTTTTTTTCTGGGATTTTAATTTCCAGTCATTTTTATCTACTTGAACAATGGACCGCTG
CAAGCTTAATGGCTATTGCAACTATTCGTTATTTAATCAGTATTTTTTCTACATCTGCAAAATTAAAATACCTGTTTTAT
TCCGCATCAATCCTTACAACGGCATTCACTTATTCTGGGCTAACTAGTGTAATTAGTTGTTTAGGTTCACTTTTTCAAAC
TGCAGCAGCTTTTAATAAAGAAGATAAGCGTTTAAGAGAGTTGATGGTAGTAGGAACGAGTTTCTGGCTTTTAAATAACT
ACTTAATTGGCTCACCAACGGCTGTTCTTATGGAAACGTTGTTTATTGGTAGTAATTTAATTGGCTATTATCGCCATTAC
TACCGTAAGAGTGAAATGGTATGA

Upstream 100 bases:

>100_bases
GAAATTAATGGTTTTGGGGTATTGAATTAAATGGTTACTTTAAATACCATTAATTGAAACTAACGTGTTGTATATTTTAT
GTTTATGAAAAGGGTATGTA

Downstream 100 bases:

>100_bases
AAATAGGTAAGATGAAATTAGTTATAACGGGTATCTGAATATATTTTTTTTATCAACGAAGCTTGTTCAGATTCACTAAT
GCCATCTTTGGTTAACAGAA

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFY
SASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHY
YRKSEMV

Sequences:

>Translated_167_residues
MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFY
SASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHY
YRKSEMV
>Mature_166_residues
SLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIATIRYLISIFSTSAKLKYLFYS
ASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRELMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYY
RKSEMV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18945; Mature: 18813

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIRYLISIFSTSAKLKYLFYSASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYYRKSEMV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLFFISQVLVAIAIIFDLMSFQFKERKSIVACLFFSGILISSHFYLLEQWTAASLMAIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIRYLISIFSTSAKLKYLFYSASILTTAFTYSGLTSVISCLGSLFQTAAAFNKEDKRLRE
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LMVVGTSFWLLNNYLIGSPTAVLMETLFIGSNLIGYYRHYYRKSEMV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA