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The map label for this gene is ycbZ [H]

Identifier: 209695060

GI number: 209695060

Start: 1667882

End: 1669549

Strand: Reverse

Name: ycbZ [H]

Synonym: VSAL_I1557

Alternate gene names: 209695060

Gene position: 1669549-1667882 (Counterclockwise)

Preceding gene: 209695062

Following gene: 209695059

Centisome position: 50.21

GC content: 37.95

Gene sequence:

>1668_bases
ATGCAGTTAGACACGCCATTTTTACTCGAGCCTCAGTACGATAATATTCTTGATATATTGAATTTATCCCATGTCAGTGA
CGCACAATCACCCTATTCTCTTCAGCCTAGGTTAACCCAAGCTTTAGCGGATTTTTCTCGTATAAATGGTGTTAACATTT
TGCAAATCAATGCGTTAGATAATCACGTTTATCGTGAATATGTAGCGAATTGGCTAATACTGAATGCTGAAAATCGCGTA
TTAAATTCAGAAGCACCTCCTGTCATTATAGTTGAAAGCGCTTCTGACTCAGAGCTCTTTGGTGTTTACCATAATAAAAG
TGATGTGTTAGAAACTGGGTTATTACAAAAAGCCGATGGCGGTTTTTTGGTAATGTCCCCAAGTGTTTTACTTGCAAATC
CTCATTTATGGCCACGCCTAAAAAGTTTGCTGCAAGGCCATTCAGTTACTATCCCCGCGAGTGATTCAAAATCACCGATG
ACTAACATCCATTATTTAACAGCGAATGTTAAATTAATTATTGTTAGTGACCGTGCACTTTTAGGGGAAATAGAGCTATT
AGAACCCGATCTACTTACTGGTATGTCGATGTTTTCTGAATATGAGTTGGATACACCGTTATCTAGTAACACTGTCACTG
GTTATGTGCAGCTAATTCAATCACTTTCAAATAAGCATAATCATTTACCACTAGCAAACGGCTCTTCGTTGCTTCCCCTA
CTCAAACTAGGTGCTCGTGAATGTGAAGATCAGACTCGACTTAATTTGTGTTTATTATGGTTAAATTCTATTTTAGCGCA
TGCTTCTTTAGCTTCTGAATCAAAAACACATATTAGCGCTGATGATTTTACACAATCATTTGAAGCAAAATATTACGTAG
AATCTTATTTACCATCCCGAGCTTTAGACGATATTTTAGAACAAAATATTCATATTGAAACTCAAGGTCAAAAAATTGGG
CAGATTAACGGCTTGACTGTCGTATCAGTACCTGGTCATCCAATTTCTTATGGTGAGCCATCGCGAATATCTTGTGTTGT
TCACCCTGGAGATGGCGAATTATCGGATGTTGAACGAAAGGTAGAGTTAGGTGGTGATTTACATGCGAAAGGCATGTTAA
TTATGCAAGCTTATATACTAAGCCAATTAGATACACATGAACCACTGCCTTTTACTGCTTCAATGGTTTTCGAACAATCT
TATTGTGAAGTCGATGGGGATAGCGCAAGTCTTGCTGAATTATGTGCATTACTTAGTGCCCTCGCTATTACGCCGATTAA
TCAAAGTTTAGCGATAACAGGATCTGTTGATCAGTTCGGTATGGTGCAACCCATTGGCGGTGTAAATGAAAAAATTGAAG
CCTTCTTTCAGCTGTGTGATAAACGCGGGTTAACTGGAGAGCAAGGTGTTATTATCCCACAAACAAATGGAATTAATCTT
GTACTTTCAGATGATGTGATTCGAGCTGTTGAGCAAAAACAGTTTACAATTCATCCTATTAGTCATGTTGAGCAAGCTGT
TGAATTATTAACGGGCTTACCATTACAATCTGAAGAACATGAATCGATGTTCTCTTTAATTGCCCAACACATTGACAAAA
TAGAGCATAATCCGAGTCAATGTTCTGCTCTATTTTGTCGTATTAAGAACTGGTTTAACCAGAGCTGA

Upstream 100 bases:

>100_bases
TAATTAGACCTTCATCTAATTGATAATGTAAGTACTGAAAAATCAGACGTATGCAATTATGTAATGTATAATCACTTTTA
TTTTTTATATATAAGTAAGC

Downstream 100 bases:

>100_bases
TCAGACTTGATAAGCGTACAAGTGTTCGCTAGAATATCCATAACTTATTTAGGAGTAATACTTTAATGCAAAACAAACCT
AGTTCATATGATCGCGAAGA

Product: protease La homolog

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MQLDTPFLLEPQYDNILDILNLSHVSDAQSPYSLQPRLTQALADFSRINGVNILQINALDNHVYREYVANWLILNAENRV
LNSEAPPVIIVESASDSELFGVYHNKSDVLETGLLQKADGGFLVMSPSVLLANPHLWPRLKSLLQGHSVTIPASDSKSPM
TNIHYLTANVKLIIVSDRALLGEIELLEPDLLTGMSMFSEYELDTPLSSNTVTGYVQLIQSLSNKHNHLPLANGSSLLPL
LKLGARECEDQTRLNLCLLWLNSILAHASLASESKTHISADDFTQSFEAKYYVESYLPSRALDDILEQNIHIETQGQKIG
QINGLTVVSVPGHPISYGEPSRISCVVHPGDGELSDVERKVELGGDLHAKGMLIMQAYILSQLDTHEPLPFTASMVFEQS
YCEVDGDSASLAELCALLSALAITPINQSLAITGSVDQFGMVQPIGGVNEKIEAFFQLCDKRGLTGEQGVIIPQTNGINL
VLSDDVIRAVEQKQFTIHPISHVEQAVELLTGLPLQSEEHESMFSLIAQHIDKIEHNPSQCSALFCRIKNWFNQS

Sequences:

>Translated_555_residues
MQLDTPFLLEPQYDNILDILNLSHVSDAQSPYSLQPRLTQALADFSRINGVNILQINALDNHVYREYVANWLILNAENRV
LNSEAPPVIIVESASDSELFGVYHNKSDVLETGLLQKADGGFLVMSPSVLLANPHLWPRLKSLLQGHSVTIPASDSKSPM
TNIHYLTANVKLIIVSDRALLGEIELLEPDLLTGMSMFSEYELDTPLSSNTVTGYVQLIQSLSNKHNHLPLANGSSLLPL
LKLGARECEDQTRLNLCLLWLNSILAHASLASESKTHISADDFTQSFEAKYYVESYLPSRALDDILEQNIHIETQGQKIG
QINGLTVVSVPGHPISYGEPSRISCVVHPGDGELSDVERKVELGGDLHAKGMLIMQAYILSQLDTHEPLPFTASMVFEQS
YCEVDGDSASLAELCALLSALAITPINQSLAITGSVDQFGMVQPIGGVNEKIEAFFQLCDKRGLTGEQGVIIPQTNGINL
VLSDDVIRAVEQKQFTIHPISHVEQAVELLTGLPLQSEEHESMFSLIAQHIDKIEHNPSQCSALFCRIKNWFNQS
>Mature_555_residues
MQLDTPFLLEPQYDNILDILNLSHVSDAQSPYSLQPRLTQALADFSRINGVNILQINALDNHVYREYVANWLILNAENRV
LNSEAPPVIIVESASDSELFGVYHNKSDVLETGLLQKADGGFLVMSPSVLLANPHLWPRLKSLLQGHSVTIPASDSKSPM
TNIHYLTANVKLIIVSDRALLGEIELLEPDLLTGMSMFSEYELDTPLSSNTVTGYVQLIQSLSNKHNHLPLANGSSLLPL
LKLGARECEDQTRLNLCLLWLNSILAHASLASESKTHISADDFTQSFEAKYYVESYLPSRALDDILEQNIHIETQGQKIG
QINGLTVVSVPGHPISYGEPSRISCVVHPGDGELSDVERKVELGGDLHAKGMLIMQAYILSQLDTHEPLPFTASMVFEQS
YCEVDGDSASLAELCALLSALAITPINQSLAITGSVDQFGMVQPIGGVNEKIEAFFQLCDKRGLTGEQGVIIPQTNGINL
VLSDDVIRAVEQKQFTIHPISHVEQAVELLTGLPLQSEEHESMFSLIAQHIDKIEHNPSQCSALFCRIKNWFNQS

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=471, Percent_Identity=41.1889596602972, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.53

Molecular weight: Translated: 61085; Mature: 61085

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDTPFLLEPQYDNILDILNLSHVSDAQSPYSLQPRLTQALADFSRINGVNILQINALD
CCCCCCEEECCCHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCH
NHVYREYVANWLILNAENRVLNSEAPPVIIVESASDSELFGVYHNKSDVLETGLLQKADG
HHHHHHHHHCEEEECCCCCEECCCCCCEEEEECCCCCCEEEEECCCHHHHHHHCCEECCC
GFLVMSPSVLLANPHLWPRLKSLLQGHSVTIPASDSKSPMTNIHYLTANVKLIIVSDRAL
CEEEECCCEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEEEEEECCHH
LGEIELLEPDLLTGMSMFSEYELDTPLSSNTVTGYVQLIQSLSNKHNHLPLANGSSLLPL
CCCEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LKLGARECEDQTRLNLCLLWLNSILAHASLASESKTHISADDFTQSFEAKYYVESYLPSR
HHHCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHH
ALDDILEQNIHIETQGQKIGQINGLTVVSVPGHPISYGEPSRISCVVHPGDGELSDVERK
HHHHHHHCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
VELGGDLHAKGMLIMQAYILSQLDTHEPLPFTASMVFEQSYCEVDGDSASLAELCALLSA
HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LAITPINQSLAITGSVDQFGMVQPIGGVNEKIEAFFQLCDKRGLTGEQGVIIPQTNGINL
HHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEE
VLSDDVIRAVEQKQFTIHPISHVEQAVELLTGLPLQSEEHESMFSLIAQHIDKIEHNPSQ
EECHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
CSALFCRIKNWFNQS
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MQLDTPFLLEPQYDNILDILNLSHVSDAQSPYSLQPRLTQALADFSRINGVNILQINALD
CCCCCCEEECCCHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCH
NHVYREYVANWLILNAENRVLNSEAPPVIIVESASDSELFGVYHNKSDVLETGLLQKADG
HHHHHHHHHCEEEECCCCCEECCCCCCEEEEECCCCCCEEEEECCCHHHHHHHCCEECCC
GFLVMSPSVLLANPHLWPRLKSLLQGHSVTIPASDSKSPMTNIHYLTANVKLIIVSDRAL
CEEEECCCEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEEEEEECCHH
LGEIELLEPDLLTGMSMFSEYELDTPLSSNTVTGYVQLIQSLSNKHNHLPLANGSSLLPL
CCCEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
LKLGARECEDQTRLNLCLLWLNSILAHASLASESKTHISADDFTQSFEAKYYVESYLPSR
HHHCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHH
ALDDILEQNIHIETQGQKIGQINGLTVVSVPGHPISYGEPSRISCVVHPGDGELSDVERK
HHHHHHHCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
VELGGDLHAKGMLIMQAYILSQLDTHEPLPFTASMVFEQSYCEVDGDSASLAELCALLSA
HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LAITPINQSLAITGSVDQFGMVQPIGGVNEKIEAFFQLCDKRGLTGEQGVIIPQTNGINL
HHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEE
VLSDDVIRAVEQKQFTIHPISHVEQAVELLTGLPLQSEEHESMFSLIAQHIDKIEHNPSQ
EECHHHHHHHHHCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
CSALFCRIKNWFNQS
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]