| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is yebT [H]
Identifier: 209695044
GI number: 209695044
Start: 1640170
End: 1642812
Strand: Reverse
Name: yebT [H]
Synonym: VSAL_I1539
Alternate gene names: 209695044
Gene position: 1642812-1640170 (Counterclockwise)
Preceding gene: 209695045
Following gene: 209695043
Centisome position: 49.41
GC content: 39.2
Gene sequence:
>2643_bases ATGAACGCGCCAAAAACCGTTGATTCTTCAATCGAAAAAGTAAACATCAAAACCGAACGTGGAATATCCCCACTTTGGAT CTTGCCCTTACTTGCCCTTTGCTTAGGCGGCTGGCTTGTATATTCTGCTTTTGTCGAGGCAGGACAACGTATTCAAATTT ATTTTGATGATGCTCAGGGCTTAACCGCAGGTAGAACAACCATTCGCTACCAAGGCTTAGAAGTCGGTATGGTCAAAAAC ATTACTTTATCGAAAGACTTATCGAATATCTATGTAGATGCTGACATTTATCCTGAAGCGTCCGAGCTATTAAAAGACAA CACTCAGTTTTGGTTAGTAAAACCACAAGCCTCGTTAACTGGGATTTCAGGGCTAGACGCTCTTGTTTCTGGTAACTACA TTGCGATTTTACCGGGTTCAGGCGAAGCAAAAACACAATTTAATGCATTGGCTAACTCCCCTGTCATTCAACCAAATTCG ACGGGATTAAACATTACATTGAGATCCAGTGATCTTGGTTCGATCTCGGTTGGTTCAAAAATCTATTATAAAAAAATTCC GATTGGTGAAGTGTATAACTTCAAATTAGATGAAAAGACCGACAAGATAAAAATCAAAGCCTTAATTGATGAAGAATATG CTCATTTAATTACGTCTAAAAGTCGCTTTTGGAATGCCAGTGGCATTGGTGCCAGTATTGGGTTTGATGGCGTTGATGTG CAATTTGAAAGTTTATCGGCCTTAATTGGTGGGGCTATTGCTGTGGATTCACCCGATGATGGTAAAGCGATTGATAATGG TGAAGAATTCCGTCTTTACTCAAATATCAAAACCGCTGGCCGTGGTATTTCCATTAAAATAACACTACCGGACAATAACC AAATTAGTCCTAATGGTTCATCGATTATGTACCGAGGATTAGAAATCGGTCAGATCAACAGCTTAAAATTATCAGACGAT AAAAAAGATATCATTGCATCAGCAACCGTTGAACCCGCGTTTGCTGATTACTTAAATGATGGCTCTCGTTTCGTACTAGA AGAAGCGAAGGTCGGCCTTTCTGGTGTCGAAAATATCGGTAATTTAGTCCGTGGTAACTTCTTAACACTGGTTCCTGGTG AAGGAGATAAATCACGAACGTTCTCCGCTATTCGTAAACCAGAGTTAATAAAACAAGACGCTAAGGCAATAACGTTCTCT TTATACGCAGATCGCTCATTTGGTTTAACTGCGGATACTAAAATCTTATATAAAGGTATTAAAGTTGGTTCGATCACTCA CGTCGCTTTAGTTGGTGACCGAGTCAAATTTGAAGCAATGATTTTTGAACAATACAAACGCCTTATAAAATCACATAGCA AATTCTTTGTTTCTGGTAGTGTCTCTGCCGAATTAACCGATTCAGGACTAAGTATTGATGTTCCTCCCGCTCAAGAATTG ATCTCAGGCTCGATAAGTTTCACGAGTGAAGGTAAAGGGTACAAGCAAAAGAATTACACGTTATTTAAAAACAGTTCATT AGCCGAGCTCGCTCAATTTAAAACAGAAAAAAGTACAGAGCTCACTTTATTTAGTGCAGAACTTCCTCCTATTACCAAGA ACAGCCCTATTCTTTATCGTAACCTTGTTGTTGGTAAAGTGACGGATTTCAGCCTTGGTAACGATGGCGTAAACATTAAA GTAAATATTGAAAAGCAATATGCTCACCTTATTCACAGTGACACTGTATTTTGGAATTATTCTGGCGTTAATGTTGAAGC CAGCTTAAGTGGTGTAAATATTCAAGCGGCCCCTCTACTATCCATGATCCGTGGTGGTATTGGTTTTGATAACATTCAAG GCGTAGAAAATAAATTAGGTCAAAAGTGGAAGCTCTACTCAACTCTTTCTGAAGCACAAGCATTCGGGAAGATCATTGCT TTCACTGCGAAAGACAGTTCATCAATATCAAAAGGAACACTGATTAAATATCAGGGCGTTACTGTTGGTGAGATAAGTAA GGTAACACCAAACTTCAAACAAAGTAATGTGTATATACAGGCTCGGATCTTTCCAGAATACGTAAATCAAATTGCCATTC CAGGCAGCCATTTTTGGGTAGTAAAACCAACAATTAGCCTGACTAAAACAGAAAATCTAGACACACTGCTTGGCAGTTAT ATTCAAGTCACACCAGGAAAAGGAAAAGGAAAAGTACAAACTCAATTTTCTTTAACTGACCAACCACAAGCCGCTGCACT TATAAGTTACACCTTAGAGTCATCCACTCGCGGGTCTGTTAAAGTAGGCACCCCACTTTTATTTAGAGAAATTGAAGTCG GTGAAGTCGTTGATGTTAGGTTAGGTGATCTATCTGACCGTATTATTATCACTATTGGTGTTCAACCAAACTATGCTTAT TTAATTCGAGAGAACAGTGTTTTCTGGAATGTATCTGGTGTAAATATGTCGATTGGTATCAGCGGTGCAAAAGTTCGAGC CGGTACTGTTGATAGCATCTTACGTGGCGGGATTGCTTTCTCTACCCCAGATGATGAATCTTTAGCTCCACAGGCAAAAG AAAACAAATCATACTTACTGTATAAAACATCAGAAGACGATTGGCCGTTGTGGAACGCAGCAATACCAAACCCAAATAAA TAA
Upstream 100 bases:
>100_bases GATTTTACACCCGGAATGGGTGCAGTAGCCTTTGGCTTAGTTGTAGTTTTTACTATGCTAGCCGTAGAAAGTTTTGATTC TCGTCTAATTTGGGATAATT
Downstream 100 bases:
>100_bases GACAAATAACCACACGTCTTAATGTATAAAAAGGCAGCTATTACTTTATAGCTGCTTTTTTATTATCAATTCTTTCAATA ATTAAGTCTTTCAATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MNAPKTVDSSIEKVNIKTERGISPLWILPLLALCLGGWLVYSAFVEAGQRIQIYFDDAQGLTAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASELLKDNTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGEAKTQFNALANSPVIQPNS TGLNITLRSSDLGSISVGSKIYYKKIPIGEVYNFKLDEKTDKIKIKALIDEEYAHLITSKSRFWNASGIGASIGFDGVDV QFESLSALIGGAIAVDSPDDGKAIDNGEEFRLYSNIKTAGRGISIKITLPDNNQISPNGSSIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFADYLNDGSRFVLEEAKVGLSGVENIGNLVRGNFLTLVPGEGDKSRTFSAIRKPELIKQDAKAITFS LYADRSFGLTADTKILYKGIKVGSITHVALVGDRVKFEAMIFEQYKRLIKSHSKFFVSGSVSAELTDSGLSIDVPPAQEL ISGSISFTSEGKGYKQKNYTLFKNSSLAELAQFKTEKSTELTLFSAELPPITKNSPILYRNLVVGKVTDFSLGNDGVNIK VNIEKQYAHLIHSDTVFWNYSGVNVEASLSGVNIQAAPLLSMIRGGIGFDNIQGVENKLGQKWKLYSTLSEAQAFGKIIA FTAKDSSSISKGTLIKYQGVTVGEISKVTPNFKQSNVYIQARIFPEYVNQIAIPGSHFWVVKPTISLTKTENLDTLLGSY IQVTPGKGKGKVQTQFSLTDQPQAAALISYTLESSTRGSVKVGTPLLFREIEVGEVVDVRLGDLSDRIIITIGVQPNYAY LIRENSVFWNVSGVNMSIGISGAKVRAGTVDSILRGGIAFSTPDDESLAPQAKENKSYLLYKTSEDDWPLWNAAIPNPNK
Sequences:
>Translated_880_residues MNAPKTVDSSIEKVNIKTERGISPLWILPLLALCLGGWLVYSAFVEAGQRIQIYFDDAQGLTAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASELLKDNTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGEAKTQFNALANSPVIQPNS TGLNITLRSSDLGSISVGSKIYYKKIPIGEVYNFKLDEKTDKIKIKALIDEEYAHLITSKSRFWNASGIGASIGFDGVDV QFESLSALIGGAIAVDSPDDGKAIDNGEEFRLYSNIKTAGRGISIKITLPDNNQISPNGSSIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFADYLNDGSRFVLEEAKVGLSGVENIGNLVRGNFLTLVPGEGDKSRTFSAIRKPELIKQDAKAITFS LYADRSFGLTADTKILYKGIKVGSITHVALVGDRVKFEAMIFEQYKRLIKSHSKFFVSGSVSAELTDSGLSIDVPPAQEL ISGSISFTSEGKGYKQKNYTLFKNSSLAELAQFKTEKSTELTLFSAELPPITKNSPILYRNLVVGKVTDFSLGNDGVNIK VNIEKQYAHLIHSDTVFWNYSGVNVEASLSGVNIQAAPLLSMIRGGIGFDNIQGVENKLGQKWKLYSTLSEAQAFGKIIA FTAKDSSSISKGTLIKYQGVTVGEISKVTPNFKQSNVYIQARIFPEYVNQIAIPGSHFWVVKPTISLTKTENLDTLLGSY IQVTPGKGKGKVQTQFSLTDQPQAAALISYTLESSTRGSVKVGTPLLFREIEVGEVVDVRLGDLSDRIIITIGVQPNYAY LIRENSVFWNVSGVNMSIGISGAKVRAGTVDSILRGGIAFSTPDDESLAPQAKENKSYLLYKTSEDDWPLWNAAIPNPNK >Mature_880_residues MNAPKTVDSSIEKVNIKTERGISPLWILPLLALCLGGWLVYSAFVEAGQRIQIYFDDAQGLTAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASELLKDNTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGEAKTQFNALANSPVIQPNS TGLNITLRSSDLGSISVGSKIYYKKIPIGEVYNFKLDEKTDKIKIKALIDEEYAHLITSKSRFWNASGIGASIGFDGVDV QFESLSALIGGAIAVDSPDDGKAIDNGEEFRLYSNIKTAGRGISIKITLPDNNQISPNGSSIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFADYLNDGSRFVLEEAKVGLSGVENIGNLVRGNFLTLVPGEGDKSRTFSAIRKPELIKQDAKAITFS LYADRSFGLTADTKILYKGIKVGSITHVALVGDRVKFEAMIFEQYKRLIKSHSKFFVSGSVSAELTDSGLSIDVPPAQEL ISGSISFTSEGKGYKQKNYTLFKNSSLAELAQFKTEKSTELTLFSAELPPITKNSPILYRNLVVGKVTDFSLGNDGVNIK VNIEKQYAHLIHSDTVFWNYSGVNVEASLSGVNIQAAPLLSMIRGGIGFDNIQGVENKLGQKWKLYSTLSEAQAFGKIIA FTAKDSSSISKGTLIKYQGVTVGEISKVTPNFKQSNVYIQARIFPEYVNQIAIPGSHFWVVKPTISLTKTENLDTLLGSY IQVTPGKGKGKVQTQFSLTDQPQAAALISYTLESSTRGSVKVGTPLLFREIEVGEVVDVRLGDLSDRIIITIGVQPNYAY LIRENSVFWNVSGVNMSIGISGAKVRAGTVDSILRGGIAFSTPDDESLAPQAKENKSYLLYKTSEDDWPLWNAAIPNPNK
Specific function: Unknown
COG id: COG3008
COG function: function code R; Paraquat-inducible protein B
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pqiB family [H]
Homologues:
Organism=Escherichia coli, GI87081984, Length=873, Percent_Identity=35.9679266895762, Blast_Score=590, Evalue=1e-169, Organism=Escherichia coli, GI1787184, Length=380, Percent_Identity=27.8947368421053, Blast_Score=162, Evalue=8e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003399 [H]
Pfam domain/function: PF02470 MCE [H]
EC number: NA
Molecular weight: Translated: 95635; Mature: 95635
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPKTVDSSIEKVNIKTERGISPLWILPLLALCLGGWLVYSAFVEAGQRIQIYFDDAQG CCCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC LTAGRTTIRYQGLEVGMVKNITLSKDLSNIYVDADIYPEASELLKDNTQFWLVKPQASLT CCCCCEEEEEECEEEEEEEEEEEECCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCCC GISGLDALVSGNYIAILPGSGEAKTQFNALANSPVIQPNSTGLNITLRSSDLGSISVGSK CCCCCHHHHCCCEEEEEECCCCCCHHHHHHCCCCEECCCCCCEEEEEECCCCCCEECCCE IYYKKIPIGEVYNFKLDEKTDKIKIKALIDEEYAHLITSKSRFWNASGIGASIGFDGVDV EEEEECCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHCCHHEECCCCCCCCCCCCCCEE QFESLSALIGGAIAVDSPDDGKAIDNGEEFRLYSNIKTAGRGISIKITLPDNNQISPNGS EHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCHHCCCCEEEEEEECCCCEECCCCC SIMYRGLEIGQINSLKLSDDKKDIIASATVEPAFADYLNDGSRFVLEEAKVGLSGVENIG EEEEECEEECCEEEEEECCCCHHEEEECCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHH NLVRGNFLTLVPGEGDKSRTFSAIRKPELIKQDAKAITFSLYADRSFGLTADTKILYKGI HHHCCCEEEEECCCCCCCHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCCCCCEEEEECE KVGSITHVALVGDRVKFEAMIFEQYKRLIKSHSKFFVSGSVSAELTDSGLSIDVPPAQEL EECCEEEEEEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEECCCHHHH ISGSISFTSEGKGYKQKNYTLFKNSSLAELAQFKTEKSTELTLFSAELPPITKNSPILYR HCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE NLVVGKVTDFSLGNDGVNIKVNIEKQYAHLIHSDTVFWNYSGVNVEASLSGVNIQAAPLL EEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEHHHHH SMIRGGIGFDNIQGVENKLGQKWKLYSTLSEAQAFGKIIAFTAKDSSSISKGTLIKYQGV HHHHCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECCC TVGEISKVTPNFKQSNVYIQARIFPEYVNQIAIPGSHFWVVKPTISLTKTENLDTLLGSY EECCHHHCCCCCCCCCEEEEEEECHHHHHHEECCCCEEEEEECEEEEEECCCHHHHHCCE IQVTPGKGKGKVQTQFSLTDQPQAAALISYTLESSTRGSVKVGTPLLFREIEVGEVVDVR EEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEECCCEEEEEECCCCEEEEE LGDLSDRIIITIGVQPNYAYLIRENSVFWNVSGVNMSIGISGAKVRAGTVDSILRGGIAF ECCCCCEEEEEEECCCCEEEEEECCEEEEEEECCEEEEECCCCEEECCCHHHHHHCCEEE STPDDESLAPQAKENKSYLLYKTSEDDWPLWNAAIPNPNK CCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCC >Mature Secondary Structure MNAPKTVDSSIEKVNIKTERGISPLWILPLLALCLGGWLVYSAFVEAGQRIQIYFDDAQG CCCCCCCCCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC LTAGRTTIRYQGLEVGMVKNITLSKDLSNIYVDADIYPEASELLKDNTQFWLVKPQASLT CCCCCEEEEEECEEEEEEEEEEEECCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCCC GISGLDALVSGNYIAILPGSGEAKTQFNALANSPVIQPNSTGLNITLRSSDLGSISVGSK CCCCCHHHHCCCEEEEEECCCCCCHHHHHHCCCCEECCCCCCEEEEEECCCCCCEECCCE IYYKKIPIGEVYNFKLDEKTDKIKIKALIDEEYAHLITSKSRFWNASGIGASIGFDGVDV EEEEECCCCCEEEEEECCCCCEEEEEEEECHHHHHHHHCCHHEECCCCCCCCCCCCCCEE QFESLSALIGGAIAVDSPDDGKAIDNGEEFRLYSNIKTAGRGISIKITLPDNNQISPNGS EHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCHHCCCCEEEEEEECCCCEECCCCC SIMYRGLEIGQINSLKLSDDKKDIIASATVEPAFADYLNDGSRFVLEEAKVGLSGVENIG EEEEECEEECCEEEEEECCCCHHEEEECCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHH NLVRGNFLTLVPGEGDKSRTFSAIRKPELIKQDAKAITFSLYADRSFGLTADTKILYKGI HHHCCCEEEEECCCCCCCHHHHHHCCCHHHHCCCCEEEEEEEECCCCCCCCCCEEEEECE KVGSITHVALVGDRVKFEAMIFEQYKRLIKSHSKFFVSGSVSAELTDSGLSIDVPPAQEL EECCEEEEEEECCCEEEHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEECCCHHHH ISGSISFTSEGKGYKQKNYTLFKNSSLAELAQFKTEKSTELTLFSAELPPITKNSPILYR HCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE NLVVGKVTDFSLGNDGVNIKVNIEKQYAHLIHSDTVFWNYSGVNVEASLSGVNIQAAPLL EEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCEEEEEECCCEEEEEECCCEEEHHHHH SMIRGGIGFDNIQGVENKLGQKWKLYSTLSEAQAFGKIIAFTAKDSSSISKGTLIKYQGV HHHHCCCCCCCCCHHHHHCCCEEEEHHHHHHHHHCCEEEEEEECCCCCCCCCEEEEECCC TVGEISKVTPNFKQSNVYIQARIFPEYVNQIAIPGSHFWVVKPTISLTKTENLDTLLGSY EECCHHHCCCCCCCCCEEEEEEECHHHHHHEECCCCEEEEEECEEEEEECCCHHHHHCCE IQVTPGKGKGKVQTQFSLTDQPQAAALISYTLESSTRGSVKVGTPLLFREIEVGEVVDVR EEEECCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCEEECCCEEEEEECCCCEEEEE LGDLSDRIIITIGVQPNYAYLIRENSVFWNVSGVNMSIGISGAKVRAGTVDSILRGGIAF ECCCCCEEEEEEECCCCEEEEEECCEEEEEEECCEEEEECCCCEEECCCHHHHHHCCEEE STPDDESLAPQAKENKSYLLYKTSEDDWPLWNAAIPNPNK CCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]