Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694891

Identifier: 209694891

GI number: 209694891

Start: 1482981

End: 1485653

Strand: Reverse

Name: 209694891

Synonym: VSAL_I1364

Alternate gene names: NA

Gene position: 1485653-1482981 (Counterclockwise)

Preceding gene: 209694892

Following gene: 209694890

Centisome position: 44.68

GC content: 41.23

Gene sequence:

>2673_bases
ATGGAAAGCAGTGAAATGAAAACAACCCAATTAAAAACAACACTTGCAGCAGCTGTTGGCTTAGCACTCTCAGGCAGCGC
TTACGCGGATGTGATTATATCTCAATACGTAGAAGGTGGAAGTTACAATAAATCGTTAGAAATCAGTAATACAGGAGACA
GTTCAGTTTCTCTCGCGGGGTATGTTCTTAAATCAAAATACAATGGTTTAAACGAATGGCAAAAGGATCTTGATCTTTCT
GCCATTACGCTTGATGCAAAGAGCGTTTATGTCATCTCAAACAGTCGAGCCTCTGATGCGATCAAAGCCGTAACCAATAA
TATTGAAAGCATCGTAAATCATAACGGCGATGACACTTACATGCTGTTTAAAGATGGGATAGAACACGACCGTATTGGGG
TCGATGGCGACGTAGATTGGGGCAAAGATAAGAGCTTTGTCCGCTCAACATTAAGTCCAAGTACAACATTTGATCCAACG
ATGTGGCTTGAGTTACCAAAAGACAATATTGATGGCCTTGGTACTTACCAAGAAGGCATTACTCCTCCTCTCCCTTTTGC
TTGTGAAACCGATTCAGGCACGACCCCTACTTTTACAGAGATTAATGAGATTCAAGGTACGGGAAATAAATCGCCGTTAA
TCACGAGTGGCTTTATTTCAGACGACGAGTATTTTGTTCAAGGCATTGTGACTGCTCGGGGCGACAGCTTGTTAAAAGGC
TTTTACCTGCAAGGCCTAAATAATGACAATGATCCAAACAGCTCTGAAGGTATTTTCGTCAGTACTGGCAGCGCCCCTTC
CCAAGAGATCCAACCAGGGGCATTAGTCTGTGTTAAAGCAAAAGTTCAAGAATATTATAGCCAAACACAATTAAAACCAG
ACACCAATAACGTCGTTGTTCAAGGTTCACAATCTCCTGTTGATGTCACTGAACTGGTCATCAATGAGAATGAAACATTA
GCAGATGCATTAGAGCGTCACGAAGGCATGCACGTTAAATTAACCTCTCATTCCGATTTACGAATTACGCGTAATTTCAG
TTTTGATTACGACAGTAAACGCAACAATATGGTGTTGTCTCATGGTGCACCACTGTATAAACCAACTCAGTTATTTGCAG
CAGAAAGTACAGAGGCCATTCAGCTAGCAAAAGAGAATGCTAAGCGTCAAATCACCATAGAATCAGACAACAAAGCCGCA
AACGGAAAAGTGCCTTACTTCCCAGAGTTTGCCTCTGATATCGACCAAGATGGCAGTGCCGATTCTTACCTTCGTCTTGG
TGCTAGAATTGAAGGACTAGAAGGAGTGGTTGCTTATTCTTACGGTCAATATCGCTTGGTTGCAAGTAATACCATCACAC
AAGAAAACATCATTACTAAAGCCTTAAATACCGATGGTTCTACGCTCTTCAATGTAGAACGTACTGACAAACCAAGTATT
GATGATGAAGATTTAACTATTACCAGTTTTAACGTTTTAAACTACTTCACCTCTGTTTCTATAAACGGTGATGCAAACCC
AACAGGTCAAAACCGTGGCGCAACAACAGCTGATGAGTTTGCAATTCAACAAGCAAAAATTCTATCGGCCTTAACCGCCA
TTGATGCTGACATTATTGGTTTGATGGAAATTGAAAATAATGGCTTTGGTGAAAACAGTGCCATTCATGATCTCACTGCC
GTGTTAAATGCACAATTTGAAGACAAAGAAGATCACTATAAATACGTTGAGATAGACGCTGCGGATAAATACCAAGGTGA
GTATTTAGGCTCTGACGCCATTATGGTCGCCCTGTTGTATCGTCCTGACAAAGTAAGATTAGAAGGTGATGCACGCGTAA
TAAAAACACCGGAGCAACACGTCACGGCAAACACCGTCACTCGAGATAACAACGGCACTATTGAATCAAACCCTGCGTAT
GATAAATATCAACGCCACAGCTTGGTTCAAGAGTTTATTGTAAAAGAAGCCAAAGAGCCGCTAACCGTTGTCGTTAATCA
CTTAAAATCAAAAGGATCAGAGTGTATTGAACAATGGCAGAACTTCAATGAAGACTCAGAAGCGCCTGACTTACAAGGCA
ATTGTAATCGCTTTAGAGTCTCAGCAGTAAAAGCCATTGGTGATGAATTAAGTACAGTTGAAGGCGATATTCTGATCTTA
GGTGACATGAATGCGTATGGTATGGAAGACCCATTACTTACGCTGACAGATTACAGCCCTGATAAATACGATCGCGACAT
CTTTACGGCGTCTTATACCACTCTTGGAAACGATACCGCCGGTAACCCTATCCCTTATGAAGAAACAGGCAGCCAAATCA
AAAAAGGGTACGGATACCTTAATCTAAATACCTTGTTGCACAGCACAGAAACCTTCTCTTATACCTACTCAGGGGAATTA
GGTAATCTTGATCACGCACTCGCTAATGAATCTCTTGCAAAACGAGTCACTCAAATTGAAGATTGGCACATTAATGCCAC
AGAAAGTAACTTGTTTGAATACAGCTCAAAGTACACTGGCGACATGGCAAAATACAACGATATGTATTCGGCTTCTGACC
ACGATCCTGTTGTTATTTCTCTTGAATATGCAGGCTCACTCAACCTACTTGCTTTATCTTCACTCTTTGGTTTTGGCTAT
CTGCGTCGAAAACTAAACAAAGACAATAAATAA

Upstream 100 bases:

>100_bases
TCTCACTATTCATGTAAAAGAAATGAATGTGACATATCAATATGAGAAGTTTAATCGATAGAAAAAACAAATAACAGTGA
ATCATTCATATAACGTGACT

Downstream 100 bases:

>100_bases
GGTAAGCGTGCGGGGAACTACACCTAACAAATAAAATTCATTATGCGTATCTTACGATCTTTCATTTAACGAGAACGTAA
TTATGCAAAAAGATAAAAAG

Product: nuclease

Products: NA

Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; Endonuclease I; Extracellular Ribonuclease/Nuclease Fusion Protein; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Calcineurin-Like Phosphoesterase; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Extracellular Nuclease/Phosphatase; 50S Ribosomal Type B; 5-Nucleotidase Family Protein

Number of amino acids: Translated: 890; Mature: 890

Protein sequence:

>890_residues
MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS
AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT
MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG
FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL
ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA
NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI
DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA
VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY
DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL
GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL
GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY
LRRKLNKDNK

Sequences:

>Translated_890_residues
MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS
AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT
MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG
FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL
ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA
NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI
DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA
VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY
DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL
GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL
GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY
LRRKLNKDNK
>Mature_890_residues
MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAGYVLKSKYNGLNEWQKDLDLS
AITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTYMLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPT
MWLELPKDNIDGLGTYQEGITPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG
FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVVQGSQSPVDVTELVINENETL
ADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLSHGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAA
NGKVPYFPEFASDIDQDGSADSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI
DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIGLMEIENNGFGENSAIHDLTA
VLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLYRPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAY
DKYQRHSLVQEFIVKEAKEPLTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL
GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYLNLNTLLHSTETFSYTYSGEL
GNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGY
LRRKLNKDNK

Specific function: Unknown

COG id: COG2374

COG function: function code R; Predicted extracellular nuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 97794; Mature: 97794

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAG
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEHHH
YVLKSKYNGLNEWQKDLDLSAITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTY
HHHHHHCCCHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEE
MLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPTMWLELPKDNIDGLGTYQEGI
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCC
TPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG
CCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHH
FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVV
HHEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE
QGSQSPVDVTELVINENETLADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLS
ECCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE
HGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAANGKVPYFPEFASDIDQDGSA
CCCCCCCCHHHEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCC
DSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI
CHHEEECCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCC
DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIG
CCCCEEEEEEHHEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
LMEIENNGFGENSAIHDLTAVLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLY
EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE
RPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAYDKYQRHSLVQEFIVKEAKEP
CCCEEEECCCCEEEECCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL
HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEE
GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYL
ECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
NLNTLLHSTETFSYTYSGELGNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTG
EEHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHCCC
DMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGYLRRKLNKDNK
CHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MESSEMKTTQLKTTLAAAVGLALSGSAYADVIISQYVEGGSYNKSLEISNTGDSSVSLAG
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEHHH
YVLKSKYNGLNEWQKDLDLSAITLDAKSVYVISNSRASDAIKAVTNNIESIVNHNGDDTY
HHHHHHCCCHHHHHHHCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEE
MLFKDGIEHDRIGVDGDVDWGKDKSFVRSTLSPSTTFDPTMWLELPKDNIDGLGTYQEGI
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHCC
TPPLPFACETDSGTTPTFTEINEIQGTGNKSPLITSGFISDDEYFVQGIVTARGDSLLKG
CCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHH
FYLQGLNNDNDPNSSEGIFVSTGSAPSQEIQPGALVCVKAKVQEYYSQTQLKPDTNNVVV
HHEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE
QGSQSPVDVTELVINENETLADALERHEGMHVKLTSHSDLRITRNFSFDYDSKRNNMVLS
ECCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEE
HGAPLYKPTQLFAAESTEAIQLAKENAKRQITIESDNKAANGKVPYFPEFASDIDQDGSA
CCCCCCCCHHHEECCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCC
DSYLRLGARIEGLEGVVAYSYGQYRLVASNTITQENIITKALNTDGSTLFNVERTDKPSI
CHHEEECCEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCCCCC
DDEDLTITSFNVLNYFTSVSINGDANPTGQNRGATTADEFAIQQAKILSALTAIDADIIG
CCCCEEEEEEHHEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEE
LMEIENNGFGENSAIHDLTAVLNAQFEDKEDHYKYVEIDAADKYQGEYLGSDAIMVALLY
EEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEE
RPDKVRLEGDARVIKTPEQHVTANTVTRDNNGTIESNPAYDKYQRHSLVQEFIVKEAKEP
CCCEEEECCCCEEEECCHHHEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
LTVVVNHLKSKGSECIEQWQNFNEDSEAPDLQGNCNRFRVSAVKAIGDELSTVEGDILIL
HHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEE
GDMNAYGMEDPLLTLTDYSPDKYDRDIFTASYTTLGNDTAGNPIPYEETGSQIKKGYGYL
ECCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCEE
NLNTLLHSTETFSYTYSGELGNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTG
EEHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHCCC
DMAKYNDMYSASDHDPVVISLEYAGSLNLLALSSLFGFGYLRRKLNKDNK
CHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA