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The map label for this gene is yhjC [H]

Identifier: 209694804

GI number: 209694804

Start: 1372689

End: 1373696

Strand: Reverse

Name: yhjC [H]

Synonym: VSAL_I1264

Alternate gene names: 209694804

Gene position: 1373696-1372689 (Counterclockwise)

Preceding gene: 209694806

Following gene: 209694800

Centisome position: 41.31

GC content: 41.17

Gene sequence:

>1008_bases
GTGAATACGTCACGATTAAAAGACCATGTTATTAGATTGTATTTCGTTGAAATACCCGATAATCTGACTTTCACTGTTTC
ATTTTTCGAGCATATGGATTTTAGGTGCAAAGTGATGGATAGACTGACCGCGTTACATGTTTTTGTCACAATCGTTGAAC
AGAAAAGTTTGAGTGCAGCAGCTGATCATCTCGACATGTCACGAGCAAAAGTGTCTCGTTATTTGGCTGAGTTAGAAAGT
TGGATGGACGTTAGATTACTGCATAGAACCACAAGAAGCCTCAGTCTAACCACGCCTGGGGAAGAAACGCTTGATGCCGC
ACGAAACCTATTAGCGTTAGCGGGTACTTTGGATGGCATTCGAAATCAAAATACAGTAAAACTGAAAGGACAACTACGAA
TAACGGCAAGCTATTCATTAATAGACAGTTGTTTAATTGATGTGATTGATGAATTTGTGACGATGTGGCCAGAAACCTCG
ATAGATATCCTTTCTACTGACGAATCGGTAAATATTATTGAATCTCGTATTGATCTGGCTATTCGCATTACGAATGACGT
TGAACCAAATATTGTGGCTAAGCGTCTAGGCGAATGCCGCTCTATTATTTGTGCTTCACCCTCCTATCTAGCCAAAAATG
GCACGCCTCAAAATGTACAAGCACTCAGTCAACATAACTGCCTTTCTTACACTTATTTTGGCCGTTCTGCATGGGTGTTT
GATGGTCCTAATGGGCCAGAGTCTGTTCCAATTACGGGGAATATTAGTGCAAACCTGTCAGAAGTATTACTTGCCGCGAC
ATTACGAGGAAATGGCATTAGCCAACAACCCCTTCCTACCGTTCAACCCTTGATTAATCGTGGTGACTTAGTGGCATTAC
TGCCTGAATGGCAGCCAAAAATCTTAAACGTTTATGCGATTTACGCGACACGAAAACAAGTAACACCTTTACAGAGAGCC
TTCATTGATTTTCTAACCAAAAGAATGAAAACGTCACGGTATTGGTAA

Upstream 100 bases:

>100_bases
AAGATCTGCTGCGGATGCATAGCTGGTCAATATCAGTGCGCTCGTTAAAGTGATTGCAGAAAATGTAGTCATAATTTACC
TATATATGTAGAAACAGTCT

Downstream 100 bases:

>100_bases
GTTAGCGTTATCTTAACGCTAACACAATCGCTGCGACACCAGAGATCGAACACATCACTAAAGACACGTTTCTAATCGTC
TCTTTGTCTATTCTATCCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNTSRLKDHVIRLYFVEIPDNLTFTVSFFEHMDFRCKVMDRLTALHVFVTIVEQKSLSAAADHLDMSRAKVSRYLAELES
WMDVRLLHRTTRSLSLTTPGEETLDAARNLLALAGTLDGIRNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETS
IDILSTDESVNIIESRIDLAIRITNDVEPNIVAKRLGECRSIICASPSYLAKNGTPQNVQALSQHNCLSYTYFGRSAWVF
DGPNGPESVPITGNISANLSEVLLAATLRGNGISQQPLPTVQPLINRGDLVALLPEWQPKILNVYAIYATRKQVTPLQRA
FIDFLTKRMKTSRYW

Sequences:

>Translated_335_residues
MNTSRLKDHVIRLYFVEIPDNLTFTVSFFEHMDFRCKVMDRLTALHVFVTIVEQKSLSAAADHLDMSRAKVSRYLAELES
WMDVRLLHRTTRSLSLTTPGEETLDAARNLLALAGTLDGIRNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETS
IDILSTDESVNIIESRIDLAIRITNDVEPNIVAKRLGECRSIICASPSYLAKNGTPQNVQALSQHNCLSYTYFGRSAWVF
DGPNGPESVPITGNISANLSEVLLAATLRGNGISQQPLPTVQPLINRGDLVALLPEWQPKILNVYAIYATRKQVTPLQRA
FIDFLTKRMKTSRYW
>Mature_335_residues
MNTSRLKDHVIRLYFVEIPDNLTFTVSFFEHMDFRCKVMDRLTALHVFVTIVEQKSLSAAADHLDMSRAKVSRYLAELES
WMDVRLLHRTTRSLSLTTPGEETLDAARNLLALAGTLDGIRNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETS
IDILSTDESVNIIESRIDLAIRITNDVEPNIVAKRLGECRSIICASPSYLAKNGTPQNVQALSQHNCLSYTYFGRSAWVF
DGPNGPESVPITGNISANLSEVLLAATLRGNGISQQPLPTVQPLINRGDLVALLPEWQPKILNVYAIYATRKQVTPLQRA
FIDFLTKRMKTSRYW

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=30.8474576271186, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=31.5068493150685, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=32.5342465753425, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=30.6338028169014, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=30.4964539007092, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=24.4755244755245, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=23.728813559322, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=24.5033112582781, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37674; Mature: 37674

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSRLKDHVIRLYFVEIPDNLTFTVSFFEHMDFRCKVMDRLTALHVFVTIVEQKSLSAA
CCCHHHHHEEEEEEEEEECCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADHLDMSRAKVSRYLAELESWMDVRLLHRTTRSLSLTTPGEETLDAARNLLALAGTLDGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHC
RNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETSIDILSTDESVNIIESRIDLA
CCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCEEEE
IRITNDVEPNIVAKRLGECRSIICASPSYLAKNGTPQNVQALSQHNCLSYTYFGRSAWVF
EEEECCCCCHHHHHHHHHHHHEEECCCCHHHCCCCCHHHHHHHHCCCEEEEEECCEEEEE
DGPNGPESVPITGNISANLSEVLLAATLRGNGISQQPLPTVQPLINRGDLVALLPEWQPK
ECCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCC
ILNVYAIYATRKQVTPLQRAFIDFLTKRMKTSRYW
EEEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNTSRLKDHVIRLYFVEIPDNLTFTVSFFEHMDFRCKVMDRLTALHVFVTIVEQKSLSAA
CCCHHHHHEEEEEEEEEECCCCEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ADHLDMSRAKVSRYLAELESWMDVRLLHRTTRSLSLTTPGEETLDAARNLLALAGTLDGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHHHHHC
RNQNTVKLKGQLRITASYSLIDSCLIDVIDEFVTMWPETSIDILSTDESVNIIESRIDLA
CCCCEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCEEEE
IRITNDVEPNIVAKRLGECRSIICASPSYLAKNGTPQNVQALSQHNCLSYTYFGRSAWVF
EEEECCCCCHHHHHHHHHHHHEEECCCCHHHCCCCCHHHHHHHHCCCEEEEEECCEEEEE
DGPNGPESVPITGNISANLSEVLLAATLRGNGISQQPLPTVQPLINRGDLVALLPEWQPK
ECCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCC
ILNVYAIYATRKQVTPLQRAFIDFLTKRMKTSRYW
EEEEEEEEECCHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]