| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694793
Identifier: 209694793
GI number: 209694793
Start: 1359029
End: 1359820
Strand: Direct
Name: 209694793
Synonym: VSAL_I1251
Alternate gene names: NA
Gene position: 1359029-1359820 (Clockwise)
Preceding gene: 209694792
Following gene: 209694795
Centisome position: 40.87
GC content: 38.13
Gene sequence:
>792_bases ATGGCTAGGTGTATTATGAAAAATAAAATCAAACTGGTTATTAAAATTGTTCTATTTTTTGCGTTTTTTGGAGTCGTTGG GCATGTTTTTGCTGCAGAAACGCTGTCAGCAAAGGCGATTGTTGAAAAATCAGATAAGCAGATGCGAGGAGAGTCAAGAT ACATAGAATTGACCATGAACGTCATCCGTCCTGATTCGACACGAAGTCTGAGTATGAAAAGTTGGAATAAAGGAAAAGAC CTTTCTTTAGTGCTTGTTACCGCTCCCGCAGAAGAACGGGGAAATGCGTCTCTGAAACGTGACAATGAGATTTGGAATTG GGATCCAAGAGCAGAGAAGGTCAGTAAAATTGTGCCATCAAAATTAGACCGATTTTGGTTGGCATCGGACTTTACGACTA ATGATGTGAGCAATCAATCATCGATAGTGGCCGACTATGATCAAACAATCATCAAAGAAGAGGTGATTGACGGCGATAAA ACGTGGGTGATTGATGCCATTGCAAAACCAGATGCCCCTATCATGTTGAGCAAAGTGCGTTTATGGATTTCACAAAAGAC GTTTATTCAACGTAAAGTCGAATCGTACGATGAGTTTAATAAATTGGTTAATACGATGAGCACGAATGATATTAAAGAGT TTAATGGCCGCAATGTTGCCACTCGTATCGATATGATCCCTGCCAATAAATCGGGTTATAAAACCGAAATTCTTATTAAT AAAGCGCATTTTGATTTCATTATTGATGATGAATTTTTCTCTAAATTACAGATGAAATCATTACGTAACTGA
Upstream 100 bases:
>100_bases ATTTTTGACATTATTCTGACTTTTCTTTGAGTTGTTTCGTCTTAGAGGTCACGAAATTATTCGTCAAAACGGATTAAAAT AAGTTCATAAATTAAGCATC
Downstream 100 bases:
>100_bases TTCTTGTAAATTGATGTGAACAACAAACATACACAACGAAAGCCTTAATGGAATAATACGTCTATTAGGGCTTTTTTATG AATTCAAATAGGCACGTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MARCIMKNKIKLVIKIVLFFAFFGVVGHVFAAETLSAKAIVEKSDKQMRGESRYIELTMNVIRPDSTRSLSMKSWNKGKD LSLVLVTAPAEERGNASLKRDNEIWNWDPRAEKVSKIVPSKLDRFWLASDFTTNDVSNQSSIVADYDQTIIKEEVIDGDK TWVIDAIAKPDAPIMLSKVRLWISQKTFIQRKVESYDEFNKLVNTMSTNDIKEFNGRNVATRIDMIPANKSGYKTEILIN KAHFDFIIDDEFFSKLQMKSLRN
Sequences:
>Translated_263_residues MARCIMKNKIKLVIKIVLFFAFFGVVGHVFAAETLSAKAIVEKSDKQMRGESRYIELTMNVIRPDSTRSLSMKSWNKGKD LSLVLVTAPAEERGNASLKRDNEIWNWDPRAEKVSKIVPSKLDRFWLASDFTTNDVSNQSSIVADYDQTIIKEEVIDGDK TWVIDAIAKPDAPIMLSKVRLWISQKTFIQRKVESYDEFNKLVNTMSTNDIKEFNGRNVATRIDMIPANKSGYKTEILIN KAHFDFIIDDEFFSKLQMKSLRN >Mature_262_residues ARCIMKNKIKLVIKIVLFFAFFGVVGHVFAAETLSAKAIVEKSDKQMRGESRYIELTMNVIRPDSTRSLSMKSWNKGKDL SLVLVTAPAEERGNASLKRDNEIWNWDPRAEKVSKIVPSKLDRFWLASDFTTNDVSNQSSIVADYDQTIIKEEVIDGDKT WVIDAIAKPDAPIMLSKVRLWISQKTFIQRKVESYDEFNKLVNTMSTNDIKEFNGRNVATRIDMIPANKSGYKTEILINK AHFDFIIDDEFFSKLQMKSLRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30169; Mature: 30038
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARCIMKNKIKLVIKIVLFFAFFGVVGHVFAAETLSAKAIVEKSDKQMRGESRYIELTMN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE VIRPDSTRSLSMKSWNKGKDLSLVLVTAPAEERGNASLKRDNEIWNWDPRAEKVSKIVPS EECCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KLDRFWLASDFTTNDVSNQSSIVADYDQTIIKEEVIDGDKTWVIDAIAKPDAPIMLSKVR HHHHHEEECCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH LWISQKTFIQRKVESYDEFNKLVNTMSTNDIKEFNGRNVATRIDMIPANKSGYKTEILIN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEECCCCCCCEEEEEEE KAHFDFIIDDEFFSKLQMKSLRN ECCCEEEECHHHHHHHHHHHHCC >Mature Secondary Structure ARCIMKNKIKLVIKIVLFFAFFGVVGHVFAAETLSAKAIVEKSDKQMRGESRYIELTMN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE VIRPDSTRSLSMKSWNKGKDLSLVLVTAPAEERGNASLKRDNEIWNWDPRAEKVSKIVPS EECCCCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KLDRFWLASDFTTNDVSNQSSIVADYDQTIIKEEVIDGDKTWVIDAIAKPDAPIMLSKVR HHHHHEEECCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH LWISQKTFIQRKVESYDEFNKLVNTMSTNDIKEFNGRNVATRIDMIPANKSGYKTEILIN HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEECCCCCCCEEEEEEE KAHFDFIIDDEFFSKLQMKSLRN ECCCEEEECHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA