| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694760
Identifier: 209694760
GI number: 209694760
Start: 1323927
End: 1324475
Strand: Direct
Name: 209694760
Synonym: VSAL_I1215
Alternate gene names: NA
Gene position: 1323927-1324475 (Clockwise)
Preceding gene: 209694759
Following gene: 209694761
Centisome position: 39.82
GC content: 32.6
Gene sequence:
>549_bases ATGTCTAATATTCAAAAACAAAGTCGCCGCGCACGTATACTTTTTCAAGGATTTTTGGTTTTTACACCGATAGCTGTACT TTATTATTGGTTAACCATTGAAACCCAATATGATTTTCTTACCTCATTCGGAATTATTCAGACTACGATTGATGTTAATG GTTATACGCAATTACCACTAACGTTAACAATTCGTATGTTAGCTGTCATTTCTAGTTTATTGTTATGCAGTATTGTTATG TACGCTTTAAATGTATTAATTCATTTATTTCGTAATTATGAGCGTAATGACATTTTCTCGCTTGAGAATGCAATGAGCTA TCAGAAGTTAGGTTACAGTCTTTTTTATTGGGTAGGAGCTTCTGTTATTTATGGTGCAGCAATGTCCGTGATTTTATCAT TTAATAATCCTCCCGGTGAGCGCATATTAGCGGTTAGTTTTGTTGGTATGAATTTTTTAACGTTACTATTTGGTTTTATT ACGTTAATAATTTCATGGGTCATGAAAGAAGGGTATATTCTTGCTGATGAAAACGAGCATACAATTTAA
Upstream 100 bases:
>100_bases CGACTTTTAATATTTTATTATCGCTTTGCGATAAAATTATATTGATTTGACATTGTTTGCACTGTATTGTCTGTGTATCA AATCAATAAGGTTATTCATT
Downstream 100 bases:
>100_bases GGATTCGTGATGACCATTCGTATAAATTTAGATGTCATGATGGCGAAGCGAAAAATGCGCCTAAAGCACTTGGCCCAAGA AGTTGGGATCACAGAAGCAA
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSNIQKQSRRARILFQGFLVFTPIAVLYYWLTIETQYDFLTSFGIIQTTIDVNGYTQLPLTLTIRMLAVISSLLLCSIVM YALNVLIHLFRNYERNDIFSLENAMSYQKLGYSLFYWVGASVIYGAAMSVILSFNNPPGERILAVSFVGMNFLTLLFGFI TLIISWVMKEGYILADENEHTI
Sequences:
>Translated_182_residues MSNIQKQSRRARILFQGFLVFTPIAVLYYWLTIETQYDFLTSFGIIQTTIDVNGYTQLPLTLTIRMLAVISSLLLCSIVM YALNVLIHLFRNYERNDIFSLENAMSYQKLGYSLFYWVGASVIYGAAMSVILSFNNPPGERILAVSFVGMNFLTLLFGFI TLIISWVMKEGYILADENEHTI >Mature_181_residues SNIQKQSRRARILFQGFLVFTPIAVLYYWLTIETQYDFLTSFGIIQTTIDVNGYTQLPLTLTIRMLAVISSLLLCSIVMY ALNVLIHLFRNYERNDIFSLENAMSYQKLGYSLFYWVGASVIYGAAMSVILSFNNPPGERILAVSFVGMNFLTLLFGFIT LIISWVMKEGYILADENEHTI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20845; Mature: 20714
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIQKQSRRARILFQGFLVFTPIAVLYYWLTIETQYDFLTSFGIIQTTIDVNGYTQLPL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEEEEECCCCEECHH TLTIRMLAVISSLLLCSIVMYALNVLIHLFRNYERNDIFSLENAMSYQKLGYSLFYWVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SVIYGAAMSVILSFNNPPGERILAVSFVGMNFLTLLFGFITLIISWVMKEGYILADENEH HHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC TI CC >Mature Secondary Structure SNIQKQSRRARILFQGFLVFTPIAVLYYWLTIETQYDFLTSFGIIQTTIDVNGYTQLPL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHEEEEECCCCEECHH TLTIRMLAVISSLLLCSIVMYALNVLIHLFRNYERNDIFSLENAMSYQKLGYSLFYWVGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SVIYGAAMSVILSFNNPPGERILAVSFVGMNFLTLLFGFITLIISWVMKEGYILADENEH HHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC TI CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA