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The map label for this gene is vasRA-1

Identifier: 209694719

GI number: 209694719

Start: 1275399

End: 1276880

Strand: Direct

Name: vasRA-1

Synonym: VSAL_I1172

Alternate gene names: NA

Gene position: 1275399-1276880 (Clockwise)

Preceding gene: 209694718

Following gene: 209694720

Centisome position: 38.36

GC content: 41.09

Gene sequence:

>1482_bases
ATGTCTACAGAGCAGCAAATAACACCAGAAGGTACTATAGAAGCGGGGATAACAATCAGTATTCTTGATCGTGCGATTAC
CGCTACAGCTCAAACACCTGTTGATACAACAAAAGAGCTTCTGAGTATTCTGACTTCGCAAGTACTTGATGGTACGGTTA
CGTGGGATAAAAATTTAACTCTTACTATCGAAAAAGCGATTAATGCAATTGATACTAAAATTTCTGAACAACTTTCATCT
GTTATGCAGAACCGTGATTTTCAGAAATTAGAAGGTACTTGGCTTGGTTTACAAAAGCTAGTTAAAAATAGCGATCTTGG
GGCTGACCTTAAAATTAAATTAGCAGATTACACTAAAGATGAACTGTTAGAACAATTTGAAGATGCTCCAGCAATCGATC
GTAGTCGTTTCTTTAATATGGTTTACCAAGAAGAGTTTGGTACTGCTGGTGGTCAACCTTATGGCGCTTTGATTGGTGAC
TATGAGTTTGGTTATGGTGACGAAGATGTTGCTTTATTACGCTATATGGGTGAAGTAGCCTCCGCTTCTCATGCACCATT
TATTGCAGCAGCAAGTGCAAGCATGTTTGATTTCACTACTTATGCAACTTTCTCAGATGGTAAGCCTGTCGCAGCAGGTT
TTGATTCTCCAGCTTATGTTAGTTGGAACGCTTTCCGTGCAAGTGACGACTCTCGTTATGTGGCATTAACTCTGCCTAAA
ACCATCGCACGTCAGCCTTACGGTGCACAAACAGTACTGGTTAAATCATTTGATTTTGAAGAATTGAAAACACGTGATAA
TGGCCAACAAATTGTAGGTTCAGATGAAGACTTTGTCTGGAGTAATGCGGCGTATGAATTCGGTTTATTACTAACGCGGT
CATTCACTGAATTTGGTTGGTGTACTGCGGTTCGTGGTACTGAGAGCGGCGGCAAAGTTGAGAGCTTACCAAGCTTTGCT
TATTACTCAGATGCAGGTGATTTGCTGCAACAATGCCCAACTGAAGTTAATTTAACTGATGAGCGTGAAAAAGAGCTAAG
TGAACTTGGTTTCCTTCCATTGGTACACTATAAAAATACAAATTATGCCGTATTTATGGGAGCGCAAACGGCTCATAAAC
CAAGGGGGAGCCTTGACCCTGATGCAATGGCAAATGCAGCTATTTCAGCTCGTTTACCATACACAATGGCAAGTAGCCGT
ATCGCTCAATGCTTAAAAGTAATGGGTCGAGATCTCATTGGCTCAAACATCGATCCTAAAGATGTCGAGAAAGATCTAAA
TGCTTGGATCCACAAAGACGTTAATCCAAATGCGATTGGTAATGAATCGAAAGCCCGCCATCCATTAGTTGAAGCAAAAG
TGACAGTTGAAGAGCAAGCTGGCCGCCCTGGTGCGTATTCTGCTGTAGCATATTTACGCCCTTGGCTTCAAATGGAAGAA
TTAAGCACATCATTACGTATGGTTGCAAATATTCCTAGTTAA

Upstream 100 bases:

>100_bases
CTAGAGATCTTGAGCGATTACTAAAAGAAATCCTACAAAGTACAGATGCAATTCAAGGTTTAGCGCAAGAATTGGGTCTG
AATAACGAAGGAGCTGAATA

Downstream 100 bases:

>100_bases
TCATATTCGGGGGGGATCTCCCTCCGAACTGTTTTGAATTGGATAGTTAATGAATACAATCAATCAATCAATAACGATGC
AATCAGAGTTAATATGCTTA

Product: type VI secretion protein VasRA-1

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MSTEQQITPEGTIEAGITISILDRAITATAQTPVDTTKELLSILTSQVLDGTVTWDKNLTLTIEKAINAIDTKISEQLSS
VMQNRDFQKLEGTWLGLQKLVKNSDLGADLKIKLADYTKDELLEQFEDAPAIDRSRFFNMVYQEEFGTAGGQPYGALIGD
YEFGYGDEDVALLRYMGEVASASHAPFIAAASASMFDFTTYATFSDGKPVAAGFDSPAYVSWNAFRASDDSRYVALTLPK
TIARQPYGAQTVLVKSFDFEELKTRDNGQQIVGSDEDFVWSNAAYEFGLLLTRSFTEFGWCTAVRGTESGGKVESLPSFA
YYSDAGDLLQQCPTEVNLTDEREKELSELGFLPLVHYKNTNYAVFMGAQTAHKPRGSLDPDAMANAAISARLPYTMASSR
IAQCLKVMGRDLIGSNIDPKDVEKDLNAWIHKDVNPNAIGNESKARHPLVEAKVTVEEQAGRPGAYSAVAYLRPWLQMEE
LSTSLRMVANIPS

Sequences:

>Translated_493_residues
MSTEQQITPEGTIEAGITISILDRAITATAQTPVDTTKELLSILTSQVLDGTVTWDKNLTLTIEKAINAIDTKISEQLSS
VMQNRDFQKLEGTWLGLQKLVKNSDLGADLKIKLADYTKDELLEQFEDAPAIDRSRFFNMVYQEEFGTAGGQPYGALIGD
YEFGYGDEDVALLRYMGEVASASHAPFIAAASASMFDFTTYATFSDGKPVAAGFDSPAYVSWNAFRASDDSRYVALTLPK
TIARQPYGAQTVLVKSFDFEELKTRDNGQQIVGSDEDFVWSNAAYEFGLLLTRSFTEFGWCTAVRGTESGGKVESLPSFA
YYSDAGDLLQQCPTEVNLTDEREKELSELGFLPLVHYKNTNYAVFMGAQTAHKPRGSLDPDAMANAAISARLPYTMASSR
IAQCLKVMGRDLIGSNIDPKDVEKDLNAWIHKDVNPNAIGNESKARHPLVEAKVTVEEQAGRPGAYSAVAYLRPWLQMEE
LSTSLRMVANIPS
>Mature_492_residues
STEQQITPEGTIEAGITISILDRAITATAQTPVDTTKELLSILTSQVLDGTVTWDKNLTLTIEKAINAIDTKISEQLSSV
MQNRDFQKLEGTWLGLQKLVKNSDLGADLKIKLADYTKDELLEQFEDAPAIDRSRFFNMVYQEEFGTAGGQPYGALIGDY
EFGYGDEDVALLRYMGEVASASHAPFIAAASASMFDFTTYATFSDGKPVAAGFDSPAYVSWNAFRASDDSRYVALTLPKT
IARQPYGAQTVLVKSFDFEELKTRDNGQQIVGSDEDFVWSNAAYEFGLLLTRSFTEFGWCTAVRGTESGGKVESLPSFAY
YSDAGDLLQQCPTEVNLTDEREKELSELGFLPLVHYKNTNYAVFMGAQTAHKPRGSLDPDAMANAAISARLPYTMASSRI
AQCLKVMGRDLIGSNIDPKDVEKDLNAWIHKDVNPNAIGNESKARHPLVEAKVTVEEQAGRPGAYSAVAYLRPWLQMEEL
STSLRMVANIPS

Specific function: Unknown

COG id: COG3517

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54170; Mature: 54039

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEQQITPEGTIEAGITISILDRAITATAQTPVDTTKELLSILTSQVLDGTVTWDKNLT
CCCCCCCCCCCCEECCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEE
LTIEKAINAIDTKISEQLSSVMQNRDFQKLEGTWLGLQKLVKNSDLGADLKIKLADYTKD
EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
ELLEQFEDAPAIDRSRFFNMVYQEEFGTAGGQPYGALIGDYEFGYGDEDVALLRYMGEVA
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
SASHAPFIAAASASMFDFTTYATFSDGKPVAAGFDSPAYVSWNAFRASDDSRYVALTLPK
CCCCCCEEEECCCCHHEEEEEEEECCCCCEEECCCCCCEEEEEEEECCCCCCEEEEECCH
TIARQPYGAQTVLVKSFDFEELKTRDNGQQIVGSDEDFVWSNAAYEFGLLLTRSFTEFGW
HHHCCCCCCCEEEEECCCHHHHHCCCCCCEECCCCCCEEECCCCHHHHHHHHHHHHHHCC
CTAVRGTESGGKVESLPSFAYYSDAGDLLQQCPTEVNLTDEREKELSELGFLPLVHYKNT
EEEECCCCCCCCCCCCCCHHEECCHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCC
NYAVFMGAQTAHKPRGSLDPDAMANAAISARLPYTMASSRIAQCLKVMGRDLIGSNIDPK
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
DVEKDLNAWIHKDVNPNAIGNESKARHPLVEAKVTVEEQAGRPGAYSAVAYLRPWLQMEE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHH
LSTSLRMVANIPS
HHHHHHHHHCCCC
>Mature Secondary Structure 
STEQQITPEGTIEAGITISILDRAITATAQTPVDTTKELLSILTSQVLDGTVTWDKNLT
CCCCCCCCCCCEECCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEECCCEE
LTIEKAINAIDTKISEQLSSVMQNRDFQKLEGTWLGLQKLVKNSDLGADLKIKLADYTKD
EEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHH
ELLEQFEDAPAIDRSRFFNMVYQEEFGTAGGQPYGALIGDYEFGYGDEDVALLRYMGEVA
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
SASHAPFIAAASASMFDFTTYATFSDGKPVAAGFDSPAYVSWNAFRASDDSRYVALTLPK
CCCCCCEEEECCCCHHEEEEEEEECCCCCEEECCCCCCEEEEEEEECCCCCCEEEEECCH
TIARQPYGAQTVLVKSFDFEELKTRDNGQQIVGSDEDFVWSNAAYEFGLLLTRSFTEFGW
HHHCCCCCCCEEEEECCCHHHHHCCCCCCEECCCCCCEEECCCCHHHHHHHHHHHHHHCC
CTAVRGTESGGKVESLPSFAYYSDAGDLLQQCPTEVNLTDEREKELSELGFLPLVHYKNT
EEEECCCCCCCCCCCCCCHHEECCHHHHHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCC
NYAVFMGAQTAHKPRGSLDPDAMANAAISARLPYTMASSRIAQCLKVMGRDLIGSNIDPK
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
DVEKDLNAWIHKDVNPNAIGNESKARHPLVEAKVTVEEQAGRPGAYSAVAYLRPWLQMEE
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHH
LSTSLRMVANIPS
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA