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The map label for this gene is yciO [H]

Identifier: 209694705

GI number: 209694705

Start: 1257859

End: 1258479

Strand: Direct

Name: yciO [H]

Synonym: VSAL_I1156

Alternate gene names: 209694705

Gene position: 1257859-1258479 (Clockwise)

Preceding gene: 209694704

Following gene: 209694708

Centisome position: 37.83

GC content: 41.22

Gene sequence:

>621_bases
ATGAGTCAATTTTTTTATGTACACCCTGATAATCCACAAGCACGTTTAATTAGCCAAGCTGTTGCTATTATTCGTGATGG
TGGTGTGATTATCTACCCTACAGACTCAGGCTATGCACTGGGTTGTCAGATTGAAAATAAACAAGCGTTAGAGCGAATTT
GTCAGATCCGACGATTGGATGATAAGCATAACTTTACGCTGGTATGTCGCGATCTTTCTGAGTTGTCTATTTATGCTCGT
GTAGATAACACTATGTTTCGTCTATTGAAAAATAATACACCAGGCGCATATACCTTTATCTTTAAAGGGACAAAAGAGGT
GCCACGTCGCCTTATGAATCCAAAACGTAAGACGATTGGTATGCGTGTGCCTGACAATAAAATTGCTTTAGACTTACTTG
AAGCTCTTGGTGAGCCATTAATGTCTACCACGTTAATCCTTCCTGGAAATGAAATGGCAGAAGCTGACCCAGAGGCTATC
CGTGATCAATTGGAACATGCAGTTGATTTGATCATGAATGGTGGCTATTTAGGTGAGCAACCAACGACAGTGATTGATTT
TAGCGATGATGATATCAAGATTGCGCGTGTTGGCGCTGGCGATCCTAGCCCGTTTGAATAA

Upstream 100 bases:

>100_bases
AGATTGGGCTTTACCTACATTTGAATAGAAAAGTGAATTTAGAATAAAAAACTAAAATAAAACCACTGTTTATACTATTA
CCTGCGGAGCAGGAGGACTT

Downstream 100 bases:

>100_bases
AGACGGCTGATATATCGTGAAGTAAATAGTCAACTGAGGTTGGCTATTTTTTTATGTGCATTACACCCACTTGTGCAGAG
TTTGTATGAGTTGTGGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHPDNPQARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLSELSIYAR
VDNTMFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAEADPEAI
RDQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPSPFE

Sequences:

>Translated_206_residues
MSQFFYVHPDNPQARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLSELSIYAR
VDNTMFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAEADPEAI
RDQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPSPFE
>Mature_205_residues
SQFFYVHPDNPQARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLDDKHNFTLVCRDLSELSIYARV
DNTMFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAEADPEAIR
DQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPSPFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=71.219512195122, Blast_Score=315, Evalue=2e-87,
Organism=Escherichia coli, GI2367210, Length=145, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23054; Mature: 22923

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHPDNPQARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLD
CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLVCRDLSELSIYARVDNTMFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIG
CCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHCC
MRVPDNKIALDLLEALGEPLMSTTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGYLGEQ
EECCCCHHHHHHHHHHCCHHHHEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVIDFSDDDIKIARVGAGDPSPFE
CCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFFYVHPDNPQARLISQAVAIIRDGGVIIYPTDSGYALGCQIENKQALERICQIRRLD
CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLVCRDLSELSIYARVDNTMFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIG
CCCCEEEEEECCCCEEEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHCC
MRVPDNKIALDLLEALGEPLMSTTLILPGNEMAEADPEAIRDQLEHAVDLIMNGGYLGEQ
EECCCCHHHHHHHHHHCCHHHHEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVIDFSDDDIKIARVGAGDPSPFE
CCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]