Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694681

Identifier: 209694681

GI number: 209694681

Start: 1233860

End: 1234483

Strand: Direct

Name: 209694681

Synonym: VSAL_I1131

Alternate gene names: NA

Gene position: 1233860-1234483 (Clockwise)

Preceding gene: 209694664

Following gene: 209694682

Centisome position: 37.11

GC content: 30.45

Gene sequence:

>624_bases
ATGAAAAAAATATTAGTTATTTGTAGTTTATTATTTTGTAGTAATCTTTGTGCAGCAAGTATAGAACCTGCTTCAGGTAT
TCATTTACGTGCTTTAAATGGCGAGGGAGTTGATGATTCAAAATCAATCTTACTTATTAATGGTGACAACCAATTAGTAT
TAGATTTTACTGGCAGATTAAAGATATCGGGAAAGAGAGATCACATTTCGACAGTGCCTTATATTGTGATAGTTAATCCT
AAAGATATTGACAGATTAGAAGTTCAATTAGTTTCTCAAGATCTCGATAAAATTAAAAATAAAATAGATAGAAATAAACC
AATATTCGAGTTCTTAGGGAATGGAAAAAAGATTGATGTTATACAATTTATTCTTCCACCTAATACTGATGTTTTTCCAT
ACGCAAATATACCTGAAGTGGTTAGATCGTATAATCAAAAGAATGGATTGATTTTTGACAGTGGAAAAATACGTGAATTG
AAAAAAGAACTTAAGGCTGTTAATCAGAGTTCAAATTCAGGAAATTCTGAGTCAGAAAATAGTTTACAGCTAAAACTTTG
GTATAGTCGTGCAACAGAATATGAGCGCAGAGCTTTCCAAAAGTGGATTATAGATCACAATTAA

Upstream 100 bases:

>100_bases
AACACTACTTGCAGGTGTTTACTACGCCTTCTAATTTGTAGTTAGTGTACATTTAAGCCAACGATATTCGTTGGCTTTTT
TTGTTATTAAAGAGAAATTA

Downstream 100 bases:

>100_bases
TTTTTGTTAAGCCTCCATTTTATGTTCTTTGAAATTGTTTTTTTGATAAAAAATTTCATAAATTTCTCGGTAAAAATGGA
AGGTTAATTAATGTAATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKKILVICSLLFCSNLCAASIEPASGIHLRALNGEGVDDSKSILLINGDNQLVLDFTGRLKISGKRDHISTVPYIVIVNP
KDIDRLEVQLVSQDLDKIKNKIDRNKPIFEFLGNGKKIDVIQFILPPNTDVFPYANIPEVVRSYNQKNGLIFDSGKIREL
KKELKAVNQSSNSGNSESENSLQLKLWYSRATEYERRAFQKWIIDHN

Sequences:

>Translated_207_residues
MKKILVICSLLFCSNLCAASIEPASGIHLRALNGEGVDDSKSILLINGDNQLVLDFTGRLKISGKRDHISTVPYIVIVNP
KDIDRLEVQLVSQDLDKIKNKIDRNKPIFEFLGNGKKIDVIQFILPPNTDVFPYANIPEVVRSYNQKNGLIFDSGKIREL
KKELKAVNQSSNSGNSESENSLQLKLWYSRATEYERRAFQKWIIDHN
>Mature_207_residues
MKKILVICSLLFCSNLCAASIEPASGIHLRALNGEGVDDSKSILLINGDNQLVLDFTGRLKISGKRDHISTVPYIVIVNP
KDIDRLEVQLVSQDLDKIKNKIDRNKPIFEFLGNGKKIDVIQFILPPNTDVFPYANIPEVVRSYNQKNGLIFDSGKIREL
KKELKAVNQSSNSGNSESENSLQLKLWYSRATEYERRAFQKWIIDHN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0319 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018635 [H]

Pfam domain/function: PF09829 DUF2057 [H]

EC number: NA

Molecular weight: Translated: 23442; Mature: 23442

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILVICSLLFCSNLCAASIEPASGIHLRALNGEGVDDSKSILLINGDNQLVLDFTGRL
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEEEEECEE
KISGKRDHISTVPYIVIVNPKDIDRLEVQLVSQDLDKIKNKIDRNKPIFEFLGNGKKIDV
EECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEE
IQFILPPNTDVFPYANIPEVVRSYNQKNGLIFDSGKIRELKKELKAVNQSSNSGNSESEN
EEEEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
SLQLKLWYSRATEYERRAFQKWIIDHN
CEEEEEEECHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKILVICSLLFCSNLCAASIEPASGIHLRALNGEGVDDSKSILLINGDNQLVLDFTGRL
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCEEEEECCCEEEEEEECEE
KISGKRDHISTVPYIVIVNPKDIDRLEVQLVSQDLDKIKNKIDRNKPIFEFLGNGKKIDV
EECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEE
IQFILPPNTDVFPYANIPEVVRSYNQKNGLIFDSGKIRELKKELKAVNQSSNSGNSESEN
EEEEECCCCCCCCCCCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCC
SLQLKLWYSRATEYERRAFQKWIIDHN
CEEEEEEECHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA