| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694613
Identifier: 209694613
GI number: 209694613
Start: 1145099
End: 1145938
Strand: Direct
Name: 209694613
Synonym: VSAL_I1053
Alternate gene names: NA
Gene position: 1145099-1145938 (Clockwise)
Preceding gene: 209694612
Following gene: 209694614
Centisome position: 34.44
GC content: 38.45
Gene sequence:
>840_bases ATGAAATTAGAAGCGATCGATTACACTGCTGAAAATGCAGCAGAGCTGTTTGTTAAGTCATTAAGAGAAACGGGATTTGG TGTACTGAAAAATCATCCAATTCAACAAGATCTTGTACAAAGTATTTACGATAATTGGTATTCATTCTTTAATAGTGAAG AGAAAGAAAATTTTCAGTTTAATGTAGACACGCAAGACGGTTTTTTCCCAGCCTCAGTGTCTGAAGTTGCGAAAGGTCAT ACAAAAAAAGACATTAAAGAATACTTCCATTACTACCCTACAGGGCAATGTCCTGCTGAATTGAAAGCACAAATTCAAGA GTATTATGATAATGCGAATACTTTAGCATCAGAATTGCTTTCTTGGGTTGAAGCGCACTCACCATCAGACGTGTCTGAGT TATTCTCTCAATCGCTTTCTAGCATGGTTGAGCAGAGTGATAAGACCTTACTTCGTATTCTTCATTACCCACCGTTAGAA GGCGATGAGGAGCTTGGTGCTATTCGTGCTGGTGCACATGAAGATATCAATTTATTAACGATACTTCCTGCCGCTAATGA ACCAGGTTTGCAAGTTAAGACAAAAGAAAACGAATGGTTAGATGTGCCGTGTGATTTTGGTAATCTAATTATTAATATTG GCGATATGCTGCAAGAAGCGTCAGAAGGGTATTATCCATCAACAACACATCGCGTTGTGAACCCTGAAGGTGCTGACAAA ACAAAATCTCGTATTTCATTGCCTTTGTTTTTACACCCTAAACCAGATGTGGTTTTATCTGAACGCCACACCGCAAATAG TTATTTGATGGAACGTTTACGTGAGTTGGGCGTAATTTAA
Upstream 100 bases:
>100_bases TATTAGCGCTTGAGGCCATCTACGCATCTTAATACAATTTAACAATACATTATAAGAAACAAATAATAGAAACCAGTCAG CCAACAATAAGATAATTATT
Downstream 100 bases:
>100_bases TTGCCCTAGTAGTTTATAAAAAGCGAGTAGCCTTGGTTACTCGCTTTTTTTGTATCTGTGTGACCTAGATTGTCTATTGA TGTTTACTCTGTGGAGAGGC
Product: 2OG-Fe(II) oxygenase
Products: NA
Alternate protein names: Oxidoreductase; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Isopenicillin N Synthase; Iron/Ascorbate Family Oxidoreductase; 2OG-Fe(II) Oxygenase Superfamily Protein; Flavonol Synthase/Dioxygenase; 2og-Fe(Ii) Oxygenase; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Oxidoreductase Iron/Ascorbate Family Protein; Iron/Ascorbate Oxidoreductase; Iron/Ascorbate Oxidoreductase Family Protein; 1-Aminocyclopropane-1-Carboxylate Oxidase; Oxygenase; Isopenicillin N Synthase And Related Dioxygenases; Oxidoreductase 2og-Fe(Ii) Oxygenase Family; Iron/Ascorbate-Dependent Oxidoreductase Family Protein; Oxidoreductase Iron/Ascorbate Family; Fe-Containing Oxidoreductase; Isopenicillin-N Synthase; 2-Oxobutyrate Oxidase; Flavonol Synthase/Flavanone 3-Hydroxylase; 2-Oxoglutarate And Fe(Ii)-Dependent Oxygenase; Dioxygenase; Oxygenase/Oxidoreductase
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MKLEAIDYTAENAAELFVKSLRETGFGVLKNHPIQQDLVQSIYDNWYSFFNSEEKENFQFNVDTQDGFFPASVSEVAKGH TKKDIKEYFHYYPTGQCPAELKAQIQEYYDNANTLASELLSWVEAHSPSDVSELFSQSLSSMVEQSDKTLLRILHYPPLE GDEELGAIRAGAHEDINLLTILPAANEPGLQVKTKENEWLDVPCDFGNLIINIGDMLQEASEGYYPSTTHRVVNPEGADK TKSRISLPLFLHPKPDVVLSERHTANSYLMERLRELGVI
Sequences:
>Translated_279_residues MKLEAIDYTAENAAELFVKSLRETGFGVLKNHPIQQDLVQSIYDNWYSFFNSEEKENFQFNVDTQDGFFPASVSEVAKGH TKKDIKEYFHYYPTGQCPAELKAQIQEYYDNANTLASELLSWVEAHSPSDVSELFSQSLSSMVEQSDKTLLRILHYPPLE GDEELGAIRAGAHEDINLLTILPAANEPGLQVKTKENEWLDVPCDFGNLIINIGDMLQEASEGYYPSTTHRVVNPEGADK TKSRISLPLFLHPKPDVVLSERHTANSYLMERLRELGVI >Mature_279_residues MKLEAIDYTAENAAELFVKSLRETGFGVLKNHPIQQDLVQSIYDNWYSFFNSEEKENFQFNVDTQDGFFPASVSEVAKGH TKKDIKEYFHYYPTGQCPAELKAQIQEYYDNANTLASELLSWVEAHSPSDVSELFSQSLSSMVEQSDKTLLRILHYPPLE GDEELGAIRAGAHEDINLLTILPAANEPGLQVKTKENEWLDVPCDFGNLIINIGDMLQEASEGYYPSTTHRVVNPEGADK TKSRISLPLFLHPKPDVVLSERHTANSYLMERLRELGVI
Specific function: Unknown
COG id: COG3491
COG function: function code R; Isopenicillin N synthase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI28572124, Length=259, Percent_Identity=27.7992277992278, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI85816264, Length=275, Percent_Identity=26.1818181818182, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31546; Mature: 31546
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLEAIDYTAENAAELFVKSLRETGFGVLKNHPIQQDLVQSIYDNWYSFFNSEEKENFQF CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE NVDTQDGFFPASVSEVAKGHTKKDIKEYFHYYPTGQCPAELKAQIQEYYDNANTLASELL EECCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHH SWVEAHSPSDVSELFSQSLSSMVEQSDKTLLRILHYPPLEGDEELGAIRAGAHEDINLLT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEE ILPAANEPGLQVKTKENEWLDVPCDFGNLIINIGDMLQEASEGYYPSTTHRVVNPEGADK EEECCCCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH TKSRISLPLFLHPKPDVVLSERHTANSYLMERLRELGVI HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKLEAIDYTAENAAELFVKSLRETGFGVLKNHPIQQDLVQSIYDNWYSFFNSEEKENFQF CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE NVDTQDGFFPASVSEVAKGHTKKDIKEYFHYYPTGQCPAELKAQIQEYYDNANTLASELL EECCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHH SWVEAHSPSDVSELFSQSLSSMVEQSDKTLLRILHYPPLEGDEELGAIRAGAHEDINLLT HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEE ILPAANEPGLQVKTKENEWLDVPCDFGNLIINIGDMLQEASEGYYPSTTHRVVNPEGADK EEECCCCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCH TKSRISLPLFLHPKPDVVLSERHTANSYLMERLRELGVI HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA