| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694597
Identifier: 209694597
GI number: 209694597
Start: 1131428
End: 1131850
Strand: Direct
Name: 209694597
Synonym: VSAL_I1037
Alternate gene names: NA
Gene position: 1131428-1131850 (Clockwise)
Preceding gene: 209694596
Following gene: 209694598
Centisome position: 34.03
GC content: 42.32
Gene sequence:
>423_bases ATGAAGTATTACACGTTAAAGCGTCGTTACTTTGATTTTGGTACTTATTCTTACTTGTTTCGACAAGATGGCAGCAAAGT ATGTTGTTTTGTAGAACCTGTTTGGGCGAATAACCAACCGTTCAAATCGTGTGTACCTGAGGGGGATTATGATCTTGTCC CTCATACCAGTGAGAAGTATGGCGAATGCTACGCTCTTGAATCTGAGTTCTTAGGTGTGACGGTTTATGGTCCAAGTATC CGTGATGCGTGTTTATGGCATATCGCTAATAAACCTTCACAGCTTGTTGGTTGTGGTGCGCCAGGTGTGGATTTTGGTTT TCTTAGCGGTGAATGGAGTGTCAAAAGTTCTGGCGTTGCGTTCAAAGCATTAATGAAAGAATTGGGCGGTAAGCCTGCCC GTTTAACAATAATGAAGGATTAA
Upstream 100 bases:
>100_bases GCATTGAATGTGAAAAGGCTATTCCCAAGGCTCGACAAGAAGCAGTAAAAGGCTGCCAATATTGTGTGAACTGCCAAGAG TTAGCGGATAAGGGGAAGTT
Downstream 100 bases:
>100_bases CTATGAATTTTCTCATCGGAATTTTTGGAAAAAGTTTGTTGGATATTGCCAAAGGCATTTTTTTACAAATCACTTGGAAG GTTATTGTCGAGCGTTTTGC
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 140
Protein sequence:
>140_residues MKYYTLKRRYFDFGTYSYLFRQDGSKVCCFVEPVWANNQPFKSCVPEGDYDLVPHTSEKYGECYALESEFLGVTVYGPSI RDACLWHIANKPSQLVGCGAPGVDFGFLSGEWSVKSSGVAFKALMKELGGKPARLTIMKD
Sequences:
>Translated_140_residues MKYYTLKRRYFDFGTYSYLFRQDGSKVCCFVEPVWANNQPFKSCVPEGDYDLVPHTSEKYGECYALESEFLGVTVYGPSI RDACLWHIANKPSQLVGCGAPGVDFGFLSGEWSVKSSGVAFKALMKELGGKPARLTIMKD >Mature_140_residues MKYYTLKRRYFDFGTYSYLFRQDGSKVCCFVEPVWANNQPFKSCVPEGDYDLVPHTSEKYGECYALESEFLGVTVYGPSI RDACLWHIANKPSQLVGCGAPGVDFGFLSGEWSVKSSGVAFKALMKELGGKPARLTIMKD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15695; Mature: 15695
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYYTLKRRYFDFGTYSYLFRQDGSKVCCFVEPVWANNQPFKSCVPEGDYDLVPHTSEKY CCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCC GECYALESEFLGVTVYGPSIRDACLWHIANKPSQLVGCGAPGVDFGFLSGEWSVKSSGVA CEEEEECCCEEEEEEECCCCCHHHHEEECCCCCEEEECCCCCCCEEEECCCCEECCCCCH FKALMKELGGKPARLTIMKD HHHHHHHHCCCCEEEEEEEC >Mature Secondary Structure MKYYTLKRRYFDFGTYSYLFRQDGSKVCCFVEPVWANNQPFKSCVPEGDYDLVPHTSEKY CCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCC GECYALESEFLGVTVYGPSIRDACLWHIANKPSQLVGCGAPGVDFGFLSGEWSVKSSGVA CEEEEECCCEEEEEEECCCCCHHHHEEECCCCCEEEECCCCCCCEEEECCCCEECCCCCH FKALMKELGGKPARLTIMKD HHHHHHHHCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA