Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694585

Identifier: 209694585

GI number: 209694585

Start: 1121338

End: 1121802

Strand: Reverse

Name: 209694585

Synonym: VSAL_I1024

Alternate gene names: NA

Gene position: 1121802-1121338 (Counterclockwise)

Preceding gene: 209694586

Following gene: 209694571

Centisome position: 33.74

GC content: 39.35

Gene sequence:

>465_bases
ATGGTTTTGTCAGTCAGAGAGGTGTTTATGCGAGTTTTATGTCAGTGTGGTACTGCGGCTATCGTTAGCCGAAATAATAT
TACCGAAGCGGTTTGTGAATTATCTTGCTCTTGTAAAGATGCCGAATGCGGCCATTCTTTTATTACGTCTATTTGCTATA
AGCATACGTTAGTGCATTCACACATTGAATTGCATAACGGGGCAACAATGGAAGGGAATCGAATTCGTTGCGGATGTGGA
GAACGCGCAGTCATTAAGAAAACAAATCGTCTTTCTTATGACTGCGCTGATTTATATTGCGAGTGTAAAAATACAAATTG
TAAGCATCAATTTGTTATGTCTTTATATTATAGTCACACCCTAAGCCCATCAGCTAAAACAACTGATACTTTGGTATACT
CATTGATTAAAGCACTGCCCCCTCAAACAAGACATGACCTTGGTCGCCAACTCTCTATGTTTTAG

Upstream 100 bases:

>100_bases
TACGCTTTAACATTGACATAGAAAAGACCGCTTAAAGAATAAAACACCTTCACGCAAACCGTTTCGTTTTACTGTACATA
AACACAGCAAGGAACATATA

Downstream 100 bases:

>100_bases
TTTGCCATTACGCCAACACTGCCTACTTCAAAAGCCATCTCAAAAATACATAAGATGGCTTTTTGCTTTTCTGGATCTAA
TATCCCTTTGTTATCCGCCA

Product: phage zinc-binding transcriptional activator

Products: NA

Alternate protein names: Phage Transcriptional Activator Ogr/Delta; Zinc-Finger Protein; Phage Gene; Bacteriophage Transcription Regulator Protein; Phage Protein

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG
ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF

Sequences:

>Translated_154_residues
MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG
ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF
>Mature_154_residues
MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHSHIELHNGATMEGNRIRCGCG
ERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHTLSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17274; Mature: 17274

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
11.7 %Cys+Met (Translated Protein)
8.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
11.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHS
CEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
HIELHNGATMEGNRIRCGCGERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHT
HHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHC
LSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MVLSVREVFMRVLCQCGTAAIVSRNNITEAVCELSCSCKDAECGHSFITSICYKHTLVHS
CEECHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
HIELHNGATMEGNRIRCGCGERAVIKKTNRLSYDCADLYCECKNTNCKHQFVMSLYYSHT
HHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHC
LSPSAKTTDTLVYSLIKALPPQTRHDLGRQLSMF
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA