Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209694527

Identifier: 209694527

GI number: 209694527

Start: 1058250

End: 1058786

Strand: Direct

Name: 209694527

Synonym: VSAL_I0961

Alternate gene names: NA

Gene position: 1058250-1058786 (Clockwise)

Preceding gene: 209694525

Following gene: 209694528

Centisome position: 31.83

GC content: 36.31

Gene sequence:

>537_bases
ATGACAACCAAATCAATAGATTTAAACCATTCTCTTTACAAAATCCTGATTGAAGACCAACTGGATAGCTTCTCAGTGTT
AGAGCTAAGAGATGCATTTATGAAATCCTCTGAGTTACTCCAAGATAAAGATAATGTAAGGCGTTTTGTTTATCGTCATA
TCTTACGTCTTGAAAGGATGCAGTTACTGGAGAGAGTTATAGAAAAAACTTCCCAAAAAGCTAAATATCGAAAAACAGTC
TTATTTTCTAAAGCAGTATGGAATACAGTCATTGAAGAAAGAGCTCCTGAATTAATAGAACCTAAGCATCAGGAGGGAAG
CTTCCTTTTTCCTAAAATGACACTTCAAAAGCGGCTTGAGCAATGCGAAAGTGATTTTCTAGCATGTATTCATGAATTTG
AAACCTATAAAAGCTTGTGTTCGGAATATCCTCATTTAGCGGATAGCTTACTTGATGTCCAGGGTCAAACTAAAACGCAG
AGCTCCAAGCTTGTTGGTGAAATGCGAGCTATTAAGATGGCTCTTACTTTATCATGA

Upstream 100 bases:

>100_bases
CAGACAAAGACAAAAACTATCCTTAGTTGCGACATATAAAGCCACGGACTATAATCCGCATATTGAAAGTAAAGTTATTT
AACTCCGGTAACCATTAACC

Downstream 100 bases:

>100_bases
TGCCTTTACGTCAATGGCAAGCAGAGTGTGTAAAGTTGACGCTAGAGCGTTATGATAGTGGGCATCAACACTTTCTTTGT
TTAGCTACCCCAGGAGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTTKSIDLNHSLYKILIEDQLDSFSVLELRDAFMKSSELLQDKDNVRRFVYRHILRLERMQLLERVIEKTSQKAKYRKTV
LFSKAVWNTVIEERAPELIEPKHQEGSFLFPKMTLQKRLEQCESDFLACIHEFETYKSLCSEYPHLADSLLDVQGQTKTQ
SSKLVGEMRAIKMALTLS

Sequences:

>Translated_178_residues
MTTKSIDLNHSLYKILIEDQLDSFSVLELRDAFMKSSELLQDKDNVRRFVYRHILRLERMQLLERVIEKTSQKAKYRKTV
LFSKAVWNTVIEERAPELIEPKHQEGSFLFPKMTLQKRLEQCESDFLACIHEFETYKSLCSEYPHLADSLLDVQGQTKTQ
SSKLVGEMRAIKMALTLS
>Mature_177_residues
TTKSIDLNHSLYKILIEDQLDSFSVLELRDAFMKSSELLQDKDNVRRFVYRHILRLERMQLLERVIEKTSQKAKYRKTVL
FSKAVWNTVIEERAPELIEPKHQEGSFLFPKMTLQKRLEQCESDFLACIHEFETYKSLCSEYPHLADSLLDVQGQTKTQS
SKLVGEMRAIKMALTLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20875; Mature: 20744

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKSIDLNHSLYKILIEDQLDSFSVLELRDAFMKSSELLQDKDNVRRFVYRHILRLERM
CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLERVIEKTSQKAKYRKTVLFSKAVWNTVIEERAPELIEPKHQEGSFLFPKMTLQKRLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEECHHHHHHHHHH
QCESDFLACIHEFETYKSLCSEYPHLADSLLDVQGQTKTQSSKLVGEMRAIKMALTLS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTKSIDLNHSLYKILIEDQLDSFSVLELRDAFMKSSELLQDKDNVRRFVYRHILRLERM
CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLERVIEKTSQKAKYRKTVLFSKAVWNTVIEERAPELIEPKHQEGSFLFPKMTLQKRLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEECHHHHHHHHHH
QCESDFLACIHEFETYKSLCSEYPHLADSLLDVQGQTKTQSSKLVGEMRAIKMALTLS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA