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The map label for this gene is rpiR [C]

Identifier: 209694472

GI number: 209694472

Start: 999132

End: 1000010

Strand: Reverse

Name: rpiR [C]

Synonym: VSAL_I0898

Alternate gene names: 209694472

Gene position: 1000010-999132 (Counterclockwise)

Preceding gene: 209694478

Following gene: 209694469

Centisome position: 30.07

GC content: 38.23

Gene sequence:

>879_bases
ATGTCCAACCATCATATTCAAATCAAAGCTGGCAATATCATTGATATGATAGGCAGTCTTTATAATAGCTTAACGCCATC
ATCAAAACGCATTGCTGATTATGTTATGGCTAACGCGACACAAGTGAGCAAGCACTCTATTGCAGAGTTATCACAGATCG
TTAATGCGGGTGATGCGACCATCATTCGTTTTTGTCGTACTTTAGGATTTAAAGGCTACCAAGATTTTAAAATGGAACTT
GCGATTGAAGTGTCTAATCTTCAAGGTCGCGAAAAAGAAATTTTTGATACGGATGTGACTGCGGAAGATAATGCGGAAGT
CATAGGGCACAAACTTCAAGCTACGATTGAAAGTGTATTGTCAGAGACCATGAACTTACTTAATTTTCAGTCTTTGGAGT
TGGTAGCAGAAGCATTAAAAGATGCGAAAGCGATTTATTTTTTTGGGGTTGGTTCTTCTGGATTAACGGCAGAAAGCGCA
AAGCATAAGTTTATGCGAATTGGTCTAAATGTAGATGCATTTACCAATAATCATTTTATGTATGTAAAGTCATCGCTAAT
GCAACCTGGCGATTTTGCTGTGGGTATTAGCCATTCTGGGTGTTCAGTCGAAACGACTAAAGCGTTGCGTTTAGCCAAAG
ATAACGGGGCTACGACGATTGCGATAACCCATAACCCACGCTCTGATATTACTAAGTATTCTGATTACGTGTTGGTTAAT
GGCAATAGACAAGGCCAATTACAAGGTGATTCTATTGGTACGAAAATTTCACAGTTATTTGTATTGGATTTAATTTATAC
CTTATTAGTGAAACGAGACATCAATGGTGCAAAAGCCAATAAATTGAAGACAACGGAAGCGTTGTGTCATAAATCCTAA

Upstream 100 bases:

>100_bases
GGCGGTTAGTACAAACTAATCACGGAGTTACACTTCACAAATAAGGAGTGCCGTGACAAAATAAAATCAGTAGGTTGTTT
TATTCAAGGATCATTTAATA

Downstream 100 bases:

>100_bases
TAAAAGAAACCGCGAGTAGGATCTCTGCTCGCGGTTTTATTATCGTTGATAAGCTAATTTACCGTAAGCGTGCGGGGAAC
TACACCTTGTCTTTTACATT

Product: RpiR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSNHHIQIKAGNIIDMIGSLYNSLTPSSKRIADYVMANATQVSKHSIAELSQIVNAGDATIIRFCRTLGFKGYQDFKMEL
AIEVSNLQGREKEIFDTDVTAEDNAEVIGHKLQATIESVLSETMNLLNFQSLELVAEALKDAKAIYFFGVGSSGLTAESA
KHKFMRIGLNVDAFTNNHFMYVKSSLMQPGDFAVGISHSGCSVETTKALRLAKDNGATTIAITHNPRSDITKYSDYVLVN
GNRQGQLQGDSIGTKISQLFVLDLIYTLLVKRDINGAKANKLKTTEALCHKS

Sequences:

>Translated_292_residues
MSNHHIQIKAGNIIDMIGSLYNSLTPSSKRIADYVMANATQVSKHSIAELSQIVNAGDATIIRFCRTLGFKGYQDFKMEL
AIEVSNLQGREKEIFDTDVTAEDNAEVIGHKLQATIESVLSETMNLLNFQSLELVAEALKDAKAIYFFGVGSSGLTAESA
KHKFMRIGLNVDAFTNNHFMYVKSSLMQPGDFAVGISHSGCSVETTKALRLAKDNGATTIAITHNPRSDITKYSDYVLVN
GNRQGQLQGDSIGTKISQLFVLDLIYTLLVKRDINGAKANKLKTTEALCHKS
>Mature_291_residues
SNHHIQIKAGNIIDMIGSLYNSLTPSSKRIADYVMANATQVSKHSIAELSQIVNAGDATIIRFCRTLGFKGYQDFKMELA
IEVSNLQGREKEIFDTDVTAEDNAEVIGHKLQATIESVLSETMNLLNFQSLELVAEALKDAKAIYFFGVGSSGLTAESAK
HKFMRIGLNVDAFTNNHFMYVKSSLMQPGDFAVGISHSGCSVETTKALRLAKDNGATTIAITHNPRSDITKYSDYVLVNG
NRQGQLQGDSIGTKISQLFVLDLIYTLLVKRDINGAKANKLKTTEALCHKS

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=262, Percent_Identity=24.8091603053435, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1788767, Length=255, Percent_Identity=27.843137254902, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082130, Length=275, Percent_Identity=24, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788159, Length=214, Percent_Identity=28.9719626168224, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31957; Mature: 31826

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNHHIQIKAGNIIDMIGSLYNSLTPSSKRIADYVMANATQVSKHSIAELSQIVNAGDAT
CCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
IIRFCRTLGFKGYQDFKMELAIEVSNLQGREKEIFDTDVTAEDNAEVIGHKLQATIESVL
HHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHH
SETMNLLNFQSLELVAEALKDAKAIYFFGVGSSGLTAESAKHKFMRIGLNVDAFTNNHFM
HHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCEEEEECCCEEEEECCEEE
YVKSSLMQPGDFAVGISHSGCSVETTKALRLAKDNGATTIAITHNPRSDITKYSDYVLVN
EEEHHCCCCCCEEEEECCCCCCCCHHHHHEEECCCCCEEEEEECCCHHHHHHCCCEEEEE
GNRQGQLQGDSIGTKISQLFVLDLIYTLLVKRDINGAKANKLKTTEALCHKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
SNHHIQIKAGNIIDMIGSLYNSLTPSSKRIADYVMANATQVSKHSIAELSQIVNAGDAT
CCCEEEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
IIRFCRTLGFKGYQDFKMELAIEVSNLQGREKEIFDTDVTAEDNAEVIGHKLQATIESVL
HHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHH
SETMNLLNFQSLELVAEALKDAKAIYFFGVGSSGLTAESAKHKFMRIGLNVDAFTNNHFM
HHHHHHHCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCEEEEECCCEEEEECCEEE
YVKSSLMQPGDFAVGISHSGCSVETTKALRLAKDNGATTIAITHNPRSDITKYSDYVLVN
EEEHHCCCCCCEEEEECCCCCCCCHHHHHEEECCCCCEEEEEECCCHHHHHHCCCEEEEE
GNRQGQLQGDSIGTKISQLFVLDLIYTLLVKRDINGAKANKLKTTEALCHKS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]