| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694458
Identifier: 209694458
GI number: 209694458
Start: 984010
End: 984765
Strand: Reverse
Name: 209694458
Synonym: VSAL_I0882
Alternate gene names: NA
Gene position: 984765-984010 (Counterclockwise)
Preceding gene: 209694459
Following gene: 209694457
Centisome position: 29.62
GC content: 41.93
Gene sequence:
>756_bases ATGAAAAAATATATTCTTTTGATTTTATGGGCGTGGGCAGCGTTTACCTTTGCGTCTCCTTTTGAGGTTTTCAAACAACC CACTCGTTCGAAAGAGGCCATAACGGAACTTTCTGAAGGGTTTAAGGATTGGTCTAAAAGTAATGCCAATTGGAAATCTA AATTATTAAGCAATGCAGAAGCGGAAGCTTTGGAAGATTTTTCTATATCAGGGTACCGGACGGCCAATCAATATTTACAT GCGGCTGAAACGAAATCGTGGGGTTCATCGGGTAGAGAGATCAAAGGTTTTGTTCGCACATTGAAATCTGGGTTAAACAA AATGCCAGAGTATCGCGGCACAACTTATCGAGGTACATGGTCAAATAAAGCGATGATAGAACAGCTAGAGGTAGGCGATG TTATGTATGAATCAGGCTTTTTGTCTACCTCTGTTATTCCTGAAGTTGCTCGACGTTTTGCCGTTGTGCCTCCTAATTCA GGTAATCGCACAGTAAGGGCTCTTTTTCATATTGAGACAAATCGACGCAGTTTTTCAATTGCATCCATTTCAGACTATAG CTCAGAGGCCGAAGTGGTTATTTCTCCGAACAGTTATTTTAAGGTGACAGGTATTGAACGAGGCGCTCTTAATAATTACA TCTCACTAGAAACGGTGTTGCCAAGATCGGTTCGTATGGGAAGCGATCGACTGTTCAATTTATATTCAGGTGAGCAGCTG CCTCCTTCTCGTTGGCAGCAGATGTTCTGTCGTTAA
Upstream 100 bases:
>100_bases CGGTGATTGGATGGGGATCGAGAAAACAAACTGAGTTTGGGATTGAATGTGGTATCAGTCCCAATAGCCTCTCTTACCAA TAATCTCAGGAGAATAGGCA
Downstream 100 bases:
>100_bases TTCATTAATTTAGGAAATATACGAATGTTTAAAACTGTGGTAGTTATCTTTTTTACGTTTATGTCATTCTTAGCGCAATC CGAAGATTTCTCAGAGTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 251
Protein sequence:
>251_residues MKKYILLILWAWAAFTFASPFEVFKQPTRSKEAITELSEGFKDWSKSNANWKSKLLSNAEAEALEDFSISGYRTANQYLH AAETKSWGSSGREIKGFVRTLKSGLNKMPEYRGTTYRGTWSNKAMIEQLEVGDVMYESGFLSTSVIPEVARRFAVVPPNS GNRTVRALFHIETNRRSFSIASISDYSSEAEVVISPNSYFKVTGIERGALNNYISLETVLPRSVRMGSDRLFNLYSGEQL PPSRWQQMFCR
Sequences:
>Translated_251_residues MKKYILLILWAWAAFTFASPFEVFKQPTRSKEAITELSEGFKDWSKSNANWKSKLLSNAEAEALEDFSISGYRTANQYLH AAETKSWGSSGREIKGFVRTLKSGLNKMPEYRGTTYRGTWSNKAMIEQLEVGDVMYESGFLSTSVIPEVARRFAVVPPNS GNRTVRALFHIETNRRSFSIASISDYSSEAEVVISPNSYFKVTGIERGALNNYISLETVLPRSVRMGSDRLFNLYSGEQL PPSRWQQMFCR >Mature_251_residues MKKYILLILWAWAAFTFASPFEVFKQPTRSKEAITELSEGFKDWSKSNANWKSKLLSNAEAEALEDFSISGYRTANQYLH AAETKSWGSSGREIKGFVRTLKSGLNKMPEYRGTTYRGTWSNKAMIEQLEVGDVMYESGFLSTSVIPEVARRFAVVPPNS GNRTVRALFHIETNRRSFSIASISDYSSEAEVVISPNSYFKVTGIERGALNNYISLETVLPRSVRMGSDRLFNLYSGEQL PPSRWQQMFCR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28496; Mature: 28496
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYILLILWAWAAFTFASPFEVFKQPTRSKEAITELSEGFKDWSKSNANWKSKLLSNAE CCHHEEHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH AEALEDFSISGYRTANQYLHAAETKSWGSSGREIKGFVRTLKSGLNKMPEYRGTTYRGTW HHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCEEECCC SNKAMIEQLEVGDVMYESGFLSTSVIPEVARRFAVVPPNSGNRTVRALFHIETNRRSFSI CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCEEEE ASISDYSSEAEVVISPNSYFKVTGIERGALNNYISLETVLPRSVRMGSDRLFNLYSGEQL EECCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEHHHCCHHHHCCCCCEEEECCCCCC PPSRWQQMFCR CHHHHHHHHCC >Mature Secondary Structure MKKYILLILWAWAAFTFASPFEVFKQPTRSKEAITELSEGFKDWSKSNANWKSKLLSNAE CCHHEEHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCH AEALEDFSISGYRTANQYLHAAETKSWGSSGREIKGFVRTLKSGLNKMPEYRGTTYRGTW HHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCEEECCC SNKAMIEQLEVGDVMYESGFLSTSVIPEVARRFAVVPPNSGNRTVRALFHIETNRRSFSI CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCEEEEEEEEECCCCEEEE ASISDYSSEAEVVISPNSYFKVTGIERGALNNYISLETVLPRSVRMGSDRLFNLYSGEQL EECCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEHHHCCHHHHCCCCCEEEECCCCCC PPSRWQQMFCR CHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA