| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209694413
Identifier: 209694413
GI number: 209694413
Start: 930125
End: 930589
Strand: Direct
Name: 209694413
Synonym: VSAL_I0834
Alternate gene names: NA
Gene position: 930125-930589 (Clockwise)
Preceding gene: 209694411
Following gene: 209694417
Centisome position: 27.97
GC content: 33.98
Gene sequence:
>465_bases ATGTACCGTTACTTTACCCCAAAAATAGTCCGATGGGCATTAAATATTTGGCCTCCATTTTGGGGAGCAGGGATATCGAT CAAAAACATTTCAGAAAATTTTCAAGATGTTCGAGTTGTACTAAAAGATCGATTTTGGAATAGGAATGCGAATCGTACCC AATATGGAGGAAGTATTTTTTCTATGACTGATCCGGTTTTTTCGTTGATGCTAATGGGTATTTTTCGGGAAGAATATTTT GTATGGGATAAAAAAGCAGAAATCGATTTTATTTCGCCGGGAACAAGTAACCTAGAGGCTCATTTTGTTATTTCCGATGA AAAAATAAAAGAAATTAAACAATTAACGGAAAATGGAAATAAATGCTTTCCAGAGTTTGAAGTGTATATTTATGATAAGA ATGGAAAGGTGGTGGCAAGAGTTAATCGAACATTGTACGTAAGGAAAAAACCTCAATTTAGATAA
Upstream 100 bases:
>100_bases GAAACCTTATCTGCAAGATCTCTTACAAAAAAATAGATGTTGATCTTTTGTTAATATACAAACTATTATGAGGTCTGACC AGAATTAAAGGGAAATAAAT
Downstream 100 bases:
>100_bases TGCCCTCATGAAAGAGGGCACTCATAAAAACTAAAATTTAGTCTTCAAGTTCTGCTAAACACATTTCTTCATGGATTTGT TTCACCCATGCAGTAACACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 154; Mature: 154
Protein sequence:
>154_residues MYRYFTPKIVRWALNIWPPFWGAGISIKNISENFQDVRVVLKDRFWNRNANRTQYGGSIFSMTDPVFSLMLMGIFREEYF VWDKKAEIDFISPGTSNLEAHFVISDEKIKEIKQLTENGNKCFPEFEVYIYDKNGKVVARVNRTLYVRKKPQFR
Sequences:
>Translated_154_residues MYRYFTPKIVRWALNIWPPFWGAGISIKNISENFQDVRVVLKDRFWNRNANRTQYGGSIFSMTDPVFSLMLMGIFREEYF VWDKKAEIDFISPGTSNLEAHFVISDEKIKEIKQLTENGNKCFPEFEVYIYDKNGKVVARVNRTLYVRKKPQFR >Mature_154_residues MYRYFTPKIVRWALNIWPPFWGAGISIKNISENFQDVRVVLKDRFWNRNANRTQYGGSIFSMTDPVFSLMLMGIFREEYF VWDKKAEIDFISPGTSNLEAHFVISDEKIKEIKQLTENGNKCFPEFEVYIYDKNGKVVARVNRTLYVRKKPQFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18337; Mature: 18337
Theoretical pI: Translated: 10.02; Mature: 10.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRYFTPKIVRWALNIWPPFWGAGISIKNISENFQDVRVVLKDRFWNRNANRTQYGGSIF CCCEECHHHHHHHHHCCCCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCCCCEECCCEEE SMTDPVFSLMLMGIFREEYFVWDKKAEIDFISPGTSNLEAHFVISDEKIKEIKQLTENGN EHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHHHCCCC KCFPEFEVYIYDKNGKVVARVNRTLYVRKKPQFR CCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCC >Mature Secondary Structure MYRYFTPKIVRWALNIWPPFWGAGISIKNISENFQDVRVVLKDRFWNRNANRTQYGGSIF CCCEECHHHHHHHHHCCCCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCCCCEECCCEEE SMTDPVFSLMLMGIFREEYFVWDKKAEIDFISPGTSNLEAHFVISDEKIKEIKQLTENGN EHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHHHCCCC KCFPEFEVYIYDKNGKVVARVNRTLYVRKKPQFR CCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA