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The map label for this gene is opsX [H]

Identifier: 209693798

GI number: 209693798

Start: 224160

End: 225230

Strand: Direct

Name: opsX [H]

Synonym: VSAL_I0183

Alternate gene names: 209693798

Gene position: 224160-225230 (Clockwise)

Preceding gene: 209693781

Following gene: 209693799

Centisome position: 6.74

GC content: 40.71

Gene sequence:

>1071_bases
ATGGCTTTATTCACTTCTGCCCCTAACTCACTCTGTATTCTACGCTTATCTGCTATTGGTGATGTTTGTCATGCTGTTGC
GGCAGTTCAAGCGATTCAAAAAGAGTGGCCGACAACCAAAATCACTTGGATTGTGGGAAAAATAGAAGCGCAATTAATTC
ATGATTTACCTGGTATTACGGTGATCCCGTTTGATAAAAAACTGGGATTAAAAGGGATGAAAGCAATTTGGTCACAGCTG
AATAACCAACGTTTTGATGCACTGATTCATATGCAATTGGCGTTACGTGCTAGTGTGTTAACTATTGGTATAAAAGCTAA
ATATAAAGTCGGTTTTAATCGCAAGCGCGCCAAAGAAGGTCAATGGCTTTTTACCAATCGTAAAATTGAAGATACGGCCT
CAGCGCATGTTCTAGATAGCTTCTACTCTTTTATTGAGTACCTTGGTGTGCCTAAAAGTGAACCAACCTGGAATATTCCA
TTATCTGACGATGACTTTTCGTTTGTGAATTCACATATTCCAGCAGAAAAGCCGTATGTGGTGATTTCCCCTGCTGCCAG
TAAGGATGAGCGTAATTGGTTGACTGAGCGCTATGCTCAATTATCTGACTGGTTAACCACACAAGGCTACCAAGTGGTAC
TTTGTGGTTCGCCAAGTGATCGTGAAAAGCAACTTGGTGACAGTATTGAATCACTTGCCAACTCTCCACTTATTAATTTA
ATTGGTAAGACTTCATTAAAACAGTTAACCGCAGTATTAAAAAAAGCCACGGTAGTAATTGCACCGGATTCAGGCCCAGC
ACATATCGCTACAACACAAGCCACACCAGTTATTGGCTTATATGGCCATAGTAATCCTAAACGCACGGGGCCATATAATA
GCTTATCTTATGTGGTGAGTGTGTATGAACAACATGTAACGCAACAACAAAATAAGCCTGTTAATGAGCTAAAATGGAGC
ACTCGCGTTAAAGGCGAGCATATAATGCAAGATATAACGCTTGATATGGTTGCCCGCTCATTTCAGCAACTGGAAATCAT
CCTAAACAGCACCGAAGAAGGGAAAAAATAA

Upstream 100 bases:

>100_bases
GCGCAGCGTATAGTTTCTAGTCTCTTTCTTGCTCTGCCATTTTACATTTATGAACGTTAATAGCATAATTCTACCTCATT
CTTTTTGGGTAAACATCTTT

Downstream 100 bases:

>100_bases
TGACAACATCCTCTCCAACCTTAGCGGTTGCGCTTATTGTTAAAAATGAAGCAAAACATTTAAAAGCCTGTCTTGATACC
GTTGCTGATTGGGTTGATGA

Product: glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 355

Protein sequence:

>356_residues
MALFTSAPNSLCILRLSAIGDVCHAVAAVQAIQKEWPTTKITWIVGKIEAQLIHDLPGITVIPFDKKLGLKGMKAIWSQL
NNQRFDALIHMQLALRASVLTIGIKAKYKVGFNRKRAKEGQWLFTNRKIEDTASAHVLDSFYSFIEYLGVPKSEPTWNIP
LSDDDFSFVNSHIPAEKPYVVISPAASKDERNWLTERYAQLSDWLTTQGYQVVLCGSPSDREKQLGDSIESLANSPLINL
IGKTSLKQLTAVLKKATVVIAPDSGPAHIATTQATPVIGLYGHSNPKRTGPYNSLSYVVSVYEQHVTQQQNKPVNELKWS
TRVKGEHIMQDITLDMVARSFQQLEIILNSTEEGKK

Sequences:

>Translated_356_residues
MALFTSAPNSLCILRLSAIGDVCHAVAAVQAIQKEWPTTKITWIVGKIEAQLIHDLPGITVIPFDKKLGLKGMKAIWSQL
NNQRFDALIHMQLALRASVLTIGIKAKYKVGFNRKRAKEGQWLFTNRKIEDTASAHVLDSFYSFIEYLGVPKSEPTWNIP
LSDDDFSFVNSHIPAEKPYVVISPAASKDERNWLTERYAQLSDWLTTQGYQVVLCGSPSDREKQLGDSIESLANSPLINL
IGKTSLKQLTAVLKKATVVIAPDSGPAHIATTQATPVIGLYGHSNPKRTGPYNSLSYVVSVYEQHVTQQQNKPVNELKWS
TRVKGEHIMQDITLDMVARSFQQLEIILNSTEEGKK
>Mature_355_residues
ALFTSAPNSLCILRLSAIGDVCHAVAAVQAIQKEWPTTKITWIVGKIEAQLIHDLPGITVIPFDKKLGLKGMKAIWSQLN
NQRFDALIHMQLALRASVLTIGIKAKYKVGFNRKRAKEGQWLFTNRKIEDTASAHVLDSFYSFIEYLGVPKSEPTWNIPL
SDDDFSFVNSHIPAEKPYVVISPAASKDERNWLTERYAQLSDWLTTQGYQVVLCGSPSDREKQLGDSIESLANSPLINLI
GKTSLKQLTAVLKKATVVIAPDSGPAHIATTQATPVIGLYGHSNPKRTGPYNSLSYVVSVYEQHVTQQQNKPVNELKWST
RVKGEHIMQDITLDMVARSFQQLEIILNSTEEGKK

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=279, Percent_Identity=23.2974910394265, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1790051, Length=325, Percent_Identity=24, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790050, Length=304, Percent_Identity=21.7105263157895, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39624; Mature: 39493

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFTSAPNSLCILRLSAIGDVCHAVAAVQAIQKEWPTTKITWIVGKIEAQLIHDLPGIT
CCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCE
VIPFDKKLGLKGMKAIWSQLNNQRFDALIHMQLALRASVLTIGIKAKYKVGFNRKRAKEG
EEECCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEEEEEEECCCHHHCCCC
QWLFTNRKIEDTASAHVLDSFYSFIEYLGVPKSEPTWNIPLSDDDFSFVNSHIPAEKPYV
CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHCCCCCCCCEE
VISPAASKDERNWLTERYAQLSDWLTTQGYQVVLCGSPSDREKQLGDSIESLANSPLINL
EEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHH
IGKTSLKQLTAVLKKATVVIAPDSGPAHIATTQATPVIGLYGHSNPKRTGPYNSLSYVVS
HHHHHHHHHHHHHHHCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHH
VYEQHVTQQQNKPVNELKWSTRVKGEHIMQDITLDMVARSFQQLEIILNSTEEGKK
HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ALFTSAPNSLCILRLSAIGDVCHAVAAVQAIQKEWPTTKITWIVGKIEAQLIHDLPGIT
CEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCE
VIPFDKKLGLKGMKAIWSQLNNQRFDALIHMQLALRASVLTIGIKAKYKVGFNRKRAKEG
EEECCHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHEEEEEEEEEEEECCCHHHCCCC
QWLFTNRKIEDTASAHVLDSFYSFIEYLGVPKSEPTWNIPLSDDDFSFVNSHIPAEKPYV
CEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHCCCCCCCCEE
VISPAASKDERNWLTERYAQLSDWLTTQGYQVVLCGSPSDREKQLGDSIESLANSPLINL
EEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHH
IGKTSLKQLTAVLKKATVVIAPDSGPAHIATTQATPVIGLYGHSNPKRTGPYNSLSYVVS
HHHHHHHHHHHHHHHCEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHH
VYEQHVTQQQNKPVNELKWSTRVKGEHIMQDITLDMVARSFQQLEIILNSTEEGKK
HHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]