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The map label for this gene is ubiD [H]

Identifier: 209693771

GI number: 209693771

Start: 189820

End: 191661

Strand: Direct

Name: ubiD [H]

Synonym: VSAL_I0150

Alternate gene names: 209693771

Gene position: 189820-191661 (Clockwise)

Preceding gene: 209693770

Following gene: 209693772

Centisome position: 5.71

GC content: 42.56

Gene sequence:

>1842_bases
ATGCAATATAAGGATTTACGCGGTTTTCTCGATCATTTGGAAGCGATCGGGCAGTTAAAACGCATTTCACACCCGATTGA
CCCTCATTATGAAATGACAGAGATCAGTGATCGTACTTTACGAGCGGGTGGCCCTGCATTGCTGTTTGAAAATCCGATTG
GTTATGATATTCCTGTATTGACCAATTTGTTTGGTACTGCGGAGCGTGTGGCAATTGGTATGGGACGTAAAGACGTTCTT
GAGCTACGTGAAGTTGGTAAGCTATTAGCGTATTTAAAAGAGCCCGAGCCACCAAAAGGGTTTAAAGATGCGATGGATAA
GCTGCCAGTATTCAAACAAGTATTGAATATGCCAACGAAGAACATCCGTAAAGCTGCATGTCAGCAAATTGTTTGGAAAG
GCGATGACGTTGATCTTGATAAAATTCCGGTAATGAGTTGTTGGGCTGGCGATGTTGCTCCCTTGCTTACATGGGGGTTA
ACCGTTACTCGTGGCCCACATAAGAAGCGTCAAAACCTAGGCATTTATCGCCAACAAAAGCTCAGTAAAAATAAAGTTAT
TATGCGTTGGCTTGCTCATCGTGGTGGTGCATTAGATTTACGTGATTGGATGGAAACGAATCCGGGCGAACCTTTCCCTG
TTTCTGTTGCGTTTGGTGCTGATCCAGCGACAATTCTTGGTGCAGTAACTCCGGTTCCTGATACGTTGTCTGAATACGCA
TTTGCCGGTCTGCTACGTGGCAGTAAAACGGAAGTGACGAAATCGATTAGTAATGATTTAGAAGTACCGGCCAGCGCTGA
AATCGTACTGGAAGGTTATATTGATCCAAGCGAATTTGCCGATGAAGGCCCTTATGGTGACCATACTGGTTATTATAATG
AAATTGAAAAGCATCATGTATTCACTGTTACCCACATCACTATGCGTAAAGACCCCATTTATCACAGCACCTATACTGGT
CGTCCGCCAGATGAACCTGCTGTATTGGGTGTGGCGTTAAACGAAGTCTTTGTGCCGATATTACAAAAGCAGTTTCCTGA
GATTATTGACTTCTATTTACCCCCTGAAGGGTGTTCATATCGCATGGCGGTAGTAACAATGAAGAAACAATACCCAGGAC
ATGCTAAACGCGTGATGATGGGTGTGTGGTCTTTCTTACGTCAATTCATGTACACTAAATTTGTTTTGGTGTGCGACGAA
GAAGTCAATGCTCGAGATTGGTCAGAAGTGACTGCTGCAATGTCTCAGCATATGGATCCGTTTCGAGACAGTTTGATGAT
AGAGAATACCCCTATCGATTCTTTAGATTTTGCTTCACCAGTCGTTGGTTTAGGTTCAAAAATGGGCTTAGATATCACTA
AAAAATGGGACGCAGAATTAGCACTGTCACCAAATATCGAATCGTCATCAATAGAGAGTGCACATATTGAAGGTAATTTA
GCCGAGTTAACAAAGGCCTTCCCTGAAATCATTGATATTTATTTACAGAATGACAATGCCAGTATGGTGATTGTATCTAT
CAATAAACAGGCTGCGCATAACGGTAAGAGAATCATGGAAGGGGTTTGGTCTCAGTTTGATGAGAACAAGTTTGTTATCG
TGTGTGACGGTGATGTCGATGTGAGTAATTGGAATGACATTATTTGGGCTGTGACGACACGAATGGACCCTGCAAGGGAT
ACACTGTTCTTGAAAAATGAAGACAGTCACTCAAAAGTTGGTTTAGACGCGACCAATAAATGGGAAGAAGAATGCCTCCG
TGAATGGGGAACACCAATCAAAAAAGATCCTGAAATAGTCGCTAAAATTGACGCTATTTGGGGTGAATTAGGTATCTTTT
GA

Upstream 100 bases:

>100_bases
TTGAGTTTGTTAAGCATTACTCAATAATACGCTTGAAGTAGGTTGGGGATATGCACTTGTTTGGGTATAATCTATTCAAA
CTTCATGACAGTAGATAGCG

Downstream 100 bases:

>100_bases
AAAAAATAACCTTATTACCACAGAAAAAAGAATTCGGCATCGAAGAAGGACAAACCATCTTAGATGCGGCATTAGAGGCC
GGGATAAACTACCCAAATCG

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MQYKDLRGFLDHLEAIGQLKRISHPIDPHYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAIGMGRKDVL
ELREVGKLLAYLKEPEPPKGFKDAMDKLPVFKQVLNMPTKNIRKAACQQIVWKGDDVDLDKIPVMSCWAGDVAPLLTWGL
TVTRGPHKKRQNLGIYRQQKLSKNKVIMRWLAHRGGALDLRDWMETNPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVTKSISNDLEVPASAEIVLEGYIDPSEFADEGPYGDHTGYYNEIEKHHVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIIDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDE
EVNARDWSEVTAAMSQHMDPFRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNIESSSIESAHIEGNL
AELTKAFPEIIDIYLQNDNASMVIVSINKQAAHNGKRIMEGVWSQFDENKFVIVCDGDVDVSNWNDIIWAVTTRMDPARD
TLFLKNEDSHSKVGLDATNKWEEECLREWGTPIKKDPEIVAKIDAIWGELGIF

Sequences:

>Translated_613_residues
MQYKDLRGFLDHLEAIGQLKRISHPIDPHYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAIGMGRKDVL
ELREVGKLLAYLKEPEPPKGFKDAMDKLPVFKQVLNMPTKNIRKAACQQIVWKGDDVDLDKIPVMSCWAGDVAPLLTWGL
TVTRGPHKKRQNLGIYRQQKLSKNKVIMRWLAHRGGALDLRDWMETNPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVTKSISNDLEVPASAEIVLEGYIDPSEFADEGPYGDHTGYYNEIEKHHVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIIDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDE
EVNARDWSEVTAAMSQHMDPFRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNIESSSIESAHIEGNL
AELTKAFPEIIDIYLQNDNASMVIVSINKQAAHNGKRIMEGVWSQFDENKFVIVCDGDVDVSNWNDIIWAVTTRMDPARD
TLFLKNEDSHSKVGLDATNKWEEECLREWGTPIKKDPEIVAKIDAIWGELGIF
>Mature_613_residues
MQYKDLRGFLDHLEAIGQLKRISHPIDPHYEMTEISDRTLRAGGPALLFENPIGYDIPVLTNLFGTAERVAIGMGRKDVL
ELREVGKLLAYLKEPEPPKGFKDAMDKLPVFKQVLNMPTKNIRKAACQQIVWKGDDVDLDKIPVMSCWAGDVAPLLTWGL
TVTRGPHKKRQNLGIYRQQKLSKNKVIMRWLAHRGGALDLRDWMETNPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTEVTKSISNDLEVPASAEIVLEGYIDPSEFADEGPYGDHTGYYNEIEKHHVFTVTHITMRKDPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIIDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDE
EVNARDWSEVTAAMSQHMDPFRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNIESSSIESAHIEGNL
AELTKAFPEIIDIYLQNDNASMVIVSINKQAAHNGKRIMEGVWSQFDENKFVIVCDGDVDVSNWNDIIWAVTTRMDPARD
TLFLKNEDSHSKVGLDATNKWEEECLREWGTPIKKDPEIVAKIDAIWGELGIF

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=459, Percent_Identity=77.5599128540305, Blast_Score=754, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=441, Percent_Identity=23.1292517006803, Blast_Score=97, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 68868; Mature: 68868

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYKDLRGFLDHLEAIGQLKRISHPIDPHYEMTEISDRTLRAGGPALLFENPIGYDIPVL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCHHHH
TNLFGTAERVAIGMGRKDVLELREVGKLLAYLKEPEPPKGFKDAMDKLPVFKQVLNMPTK
HHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCHH
NIRKAACQQIVWKGDDVDLDKIPVMSCWAGDVAPLLTWGLTVTRGPHKKRQNLGIYRQQK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCEEECCCCHHHHCCCHHHHHH
LSKNKVIMRWLAHRGGALDLRDWMETNPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
HCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHH
FAGLLRGSKTEVTKSISNDLEVPASAEIVLEGYIDPSEFADEGPYGDHTGYYNEIEKHHV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHCCCEE
FTVTHITMRKDPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIIDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDEEVNARDWSEVTAAMSQHMDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCH
FRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNIESSSIESAHIEGNL
HHHCEEECCCCCCCCHHCCHHHHCCCCCCCCEEECCCCEEEECCCCCCCCCCHHCCCCCH
AELTKAFPEIIDIYLQNDNASMVIVSINKQAAHNGKRIMEGVWSQFDENKFVIVCDGDVD
HHHHHHHHHHEEEEEECCCCEEEEEEECCHHHHCHHHHHHHHHHHCCCCCEEEEECCCCC
VSNWNDIIWAVTTRMDPARDTLFLKNEDSHSKVGLDATNKWEEECLREWGTPIKKDPEIV
CCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHH
AKIDAIWGELGIF
HHHHHHHHHHCCC
>Mature Secondary Structure
MQYKDLRGFLDHLEAIGQLKRISHPIDPHYEMTEISDRTLRAGGPALLFENPIGYDIPVL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCCCHHHH
TNLFGTAERVAIGMGRKDVLELREVGKLLAYLKEPEPPKGFKDAMDKLPVFKQVLNMPTK
HHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHCCCHH
NIRKAACQQIVWKGDDVDLDKIPVMSCWAGDVAPLLTWGLTVTRGPHKKRQNLGIYRQQK
HHHHHHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHCCEEECCCCHHHHCCCHHHHHH
LSKNKVIMRWLAHRGGALDLRDWMETNPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
HCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHH
FAGLLRGSKTEVTKSISNDLEVPASAEIVLEGYIDPSEFADEGPYGDHTGYYNEIEKHHV
HHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHCCCEE
FTVTHITMRKDPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIIDFYLPPEGCSY
EEEEEEEEECCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVLVCDEEVNARDWSEVTAAMSQHMDP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHCCCH
FRDSLMIENTPIDSLDFASPVVGLGSKMGLDITKKWDAELALSPNIESSSIESAHIEGNL
HHHCEEECCCCCCCCHHCCHHHHCCCCCCCCEEECCCCEEEECCCCCCCCCCHHCCCCCH
AELTKAFPEIIDIYLQNDNASMVIVSINKQAAHNGKRIMEGVWSQFDENKFVIVCDGDVD
HHHHHHHHHHEEEEEECCCCEEEEEEECCHHHHCHHHHHHHHHHHCCCCCEEEEECCCCC
VSNWNDIIWAVTTRMDPARDTLFLKNEDSHSKVGLDATNKWEEECLREWGTPIKKDPEIV
CCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHH
AKIDAIWGELGIF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA