| Definition | Aliivibrio salmonicida LFI1238 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011312 |
| Length | 3,325,165 |
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The map label for this gene is 209693770
Identifier: 209693770
GI number: 209693770
Start: 188701
End: 189723
Strand: Direct
Name: 209693770
Synonym: VSAL_I0149
Alternate gene names: NA
Gene position: 188701-189723 (Clockwise)
Preceding gene: 209693769
Following gene: 209693771
Centisome position: 5.67
GC content: 41.74
Gene sequence:
>1023_bases ATGCGACAAGGACTGTTAGCATCAATCCTCCTTTCTACTAGTTTGATGGTCGGTGTAGTATCCGCCTCTGAAATTCAGCC TACATTTGCGAAGAGCTTATTGGTTGATGCACAACTAAAAAAGAAAGTGGATGAATTACATCAATACCTTATTGATGGTG ACATTATTACACTCAATTTCTCTCTCAATCGTTTGTCTATGCCTCAGCAAGAAGCCGTACGCTTTATGTTGCTCCAACAG ATAGAGCAACAGAAACTCATTTTGGATCCAAAAGGAACGATTTGGTTAAGAGCGCAATTAACGAAACACCCAACCTATAT GATTAAAGAGCAAGGTGATGGGTATGTTGTGACTAAATTGGCGTTTGATTATTCTAGTATTGCTTCTCGTGTGCTAAACC AAATGTCGAAAGATCAACAAGTCTTAGATTTTATTCTTGCTGCAGAAGAGCACAGCTTAGTACTGTCTGAATGGCTCGTG GGTGAACCCCATGAGGTGCGCGTACGTCAATCCATCGTTTTAGCTGAGTTAGACAGCTTAACCCCTGAAGCGCTTGCCTA TTTATCTGGGCAAATAGACGATGGACCGATTTCTGTCTGGTTACCCACCACGGAAATTGTCGTTCGTTTAGCTCCGTTAT CGCAAGATCCTGCCGTATATAAAATTTTATGGAAAATGAGAACAGATCAACACAGTATTTCAGAACTAACTCGTTTATCT CGTTTATCTCGTTTATCTCGTTTATCTCGTTTAGCGCCGGACAAGTTTGCAACCGATCAACTGATTGCGGCAACGAGTAA TCCTTCACTAAAACAAAGCGCGTTTGCTTCTCTAGCGCAGCTGCATCCTTTGCCTTCAGATGTTGAGCAGTTCTTATTGG CTAAGCTCAGTCATATCCAAGATGGTGGCGCTGTCGCACTTCATTTAGCCAATTATGGGCATGGTTCTTGGCTAGAAAGT TTATTGAATAGTCGCAATAAAGTTCGTAAGCAACACGTAAGATTTGCGTTATCACAACGTTGA
Upstream 100 bases:
>100_bases GCGCTTTTTTGTTGATTAAATGTTAATTTGATCGCATTATGGTTTGTACTAAACTTGATAAGGATAATTCAGTTTAGTTA TTTTTTAAGGAGCTCCCTCT
Downstream 100 bases:
>100_bases GTTTGTTAAGCATTACTCAATAATACGCTTGAAGTAGGTTGGGGATATGCACTTGTTTGGGTATAATCTATTCAAACTTC ATGACAGTAGATAGCGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MRQGLLASILLSTSLMVGVVSASEIQPTFAKSLLVDAQLKKKVDELHQYLIDGDIITLNFSLNRLSMPQQEAVRFMLLQQ IEQQKLILDPKGTIWLRAQLTKHPTYMIKEQGDGYVVTKLAFDYSSIASRVLNQMSKDQQVLDFILAAEEHSLVLSEWLV GEPHEVRVRQSIVLAELDSLTPEALAYLSGQIDDGPISVWLPTTEIVVRLAPLSQDPAVYKILWKMRTDQHSISELTRLS RLSRLSRLSRLAPDKFATDQLIAATSNPSLKQSAFASLAQLHPLPSDVEQFLLAKLSHIQDGGAVALHLANYGHGSWLES LLNSRNKVRKQHVRFALSQR
Sequences:
>Translated_340_residues MRQGLLASILLSTSLMVGVVSASEIQPTFAKSLLVDAQLKKKVDELHQYLIDGDIITLNFSLNRLSMPQQEAVRFMLLQQ IEQQKLILDPKGTIWLRAQLTKHPTYMIKEQGDGYVVTKLAFDYSSIASRVLNQMSKDQQVLDFILAAEEHSLVLSEWLV GEPHEVRVRQSIVLAELDSLTPEALAYLSGQIDDGPISVWLPTTEIVVRLAPLSQDPAVYKILWKMRTDQHSISELTRLS RLSRLSRLSRLAPDKFATDQLIAATSNPSLKQSAFASLAQLHPLPSDVEQFLLAKLSHIQDGGAVALHLANYGHGSWLES LLNSRNKVRKQHVRFALSQR >Mature_340_residues MRQGLLASILLSTSLMVGVVSASEIQPTFAKSLLVDAQLKKKVDELHQYLIDGDIITLNFSLNRLSMPQQEAVRFMLLQQ IEQQKLILDPKGTIWLRAQLTKHPTYMIKEQGDGYVVTKLAFDYSSIASRVLNQMSKDQQVLDFILAAEEHSLVLSEWLV GEPHEVRVRQSIVLAELDSLTPEALAYLSGQIDDGPISVWLPTTEIVVRLAPLSQDPAVYKILWKMRTDQHSISELTRLS RLSRLSRLSRLAPDKFATDQLIAATSNPSLKQSAFASLAQLHPLPSDVEQFLLAKLSHIQDGGAVALHLANYGHGSWLES LLNSRNKVRKQHVRFALSQR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38102; Mature: 38102
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQGLLASILLSTSLMVGVVSASEIQPTFAKSLLVDAQLKKKVDELHQYLIDGDIITLNF CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE SLNRLSMPQQEAVRFMLLQQIEQQKLILDPKGTIWLRAQLTKHPTYMIKEQGDGYVVTKL ECCCCCCCHHHHHHHHHHHHHHHHCEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEE AFDYSSIASRVLNQMSKDQQVLDFILAAEEHSLVLSEWLVGEPHEVRVRQSIVLAELDSL HHCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC TPEALAYLSGQIDDGPISVWLPTTEIVVRLAPLSQDPAVYKILWKMRTDQHSISELTRLS CHHHHHHHCCCCCCCCEEEEECHHHHHEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHH RLSRLSRLSRLAPDKFATDQLIAATSNPSLKQSAFASLAQLHPLPSDVEQFLLAKLSHIQ HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC DGGAVALHLANYGHGSWLESLLNSRNKVRKQHVRFALSQR CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRQGLLASILLSTSLMVGVVSASEIQPTFAKSLLVDAQLKKKVDELHQYLIDGDIITLNF CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE SLNRLSMPQQEAVRFMLLQQIEQQKLILDPKGTIWLRAQLTKHPTYMIKEQGDGYVVTKL ECCCCCCCHHHHHHHHHHHHHHHHCEEECCCCCEEEEEEECCCCCEEEEECCCCEEEEEE AFDYSSIASRVLNQMSKDQQVLDFILAAEEHSLVLSEWLVGEPHEVRVRQSIVLAELDSL HHCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC TPEALAYLSGQIDDGPISVWLPTTEIVVRLAPLSQDPAVYKILWKMRTDQHSISELTRLS CHHHHHHHCCCCCCCCEEEEECHHHHHEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHH RLSRLSRLSRLAPDKFATDQLIAATSNPSLKQSAFASLAQLHPLPSDVEQFLLAKLSHIQ HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC DGGAVALHLANYGHGSWLESLLNSRNKVRKQHVRFALSQR CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA