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The map label for this gene is xerC [H]

Identifier: 209693751

GI number: 209693751

Start: 163970

End: 164881

Strand: Direct

Name: xerC [H]

Synonym: VSAL_I0128

Alternate gene names: 209693751

Gene position: 163970-164881 (Clockwise)

Preceding gene: 209693750

Following gene: 209693752

Centisome position: 4.93

GC content: 42.11

Gene sequence:

>912_bases
ATGAGTGAATCATTACCTCCGCAATATGAAAAACACCTAACTGCATTTTACGAGTTCTTGCGTAATGAAAAGGGATTGAG
TATTTATACTCAACGTAACTATAAGCGCCAGTTAACAACCATTGCTGAGCAGTTAATTGAGCTTGGTGTTGATTCTTGGC
AAGACGTTGATGCTGGGTGGGTTCGACAAATCACTAGTAAAGGCATGCGTTCGGGATTGAAAGCGAGCAGCTTATCGACT
CGACTGTCTTCATTACGCAGTTTTTTTGATTTCTTAGTCTTACGTAATGTATTGCAAGCAAACCCCGCGAAAGGTGTTTC
TGCGCCTCGTAAATCTCGACCATTACCAAAAAATATTGATGTGGATGAGATGGGGCAGTTACTGGAAGTGAATGAAGATG
ATCCATTATCGATTCGAGACCGAGCGATGATGGAGCTAATGTACGGCGCGGGTTTACGTTTGGCTGAATTAGTCGGAATT
GATGTTCGAGACATTCAATTACGCCAAGGTGAATTACGAGTTATTGGTAAGGGGGATAAAGAGCGTAAAGTCCCTTTTTC
TGGGAAAGCGAAAGAATGGTTAGGACACTGGCTGCAAGTGCGAAACCAATTAGCGAACCCAGAAGAGAAAGGGTTGTTTG
TTTCTAAATTAGGCGTTCGAATTTCTCATCGAAATGTGCAAAAACGTATGGCTGAGTGGGGAATGAAGCAAGGGGTGAAT
AGCCACATTAGTCCACACAAACTACGTCACTCATTTGCTACGCATATGCTTGAATCGAGCGGTAACTTACGTGCAGTACA
AGAATTATTAGGACACGAAAATATTTCTACTACGCAAATCTATACCCATTTAGATTTTCAACATCTTGCTCAAGCGTACG
ATCAAGCGCATCCAAGAGCGAAGAAAAAATAG

Upstream 100 bases:

>100_bases
CGTGATGGTGGCCATTTTCAACCGAATATGGATACGTTATTTTTGGAACAACTTGTGAGTGTGTTCCATTACTTACTAAC
TCAGTGGTCTAAAGCACATA

Downstream 100 bases:

>100_bases
AGATAAAGTATCGTAATTTTACTTATTGATAATAAAAAGCCAGTGAGAGCATATGATTGTTCCATTGGCTTTTTTAGTTT
CTTAATAGTAAGCGTGCGGG

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLST
RLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVGI
DVRDIQLRQGELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVN
SHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK

Sequences:

>Translated_303_residues
MSESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLST
RLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVGI
DVRDIQLRQGELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVN
SHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK
>Mature_302_residues
SESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLSTR
LSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVGID
VRDIQLRQGELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVNS
HISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRAKKK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=287, Percent_Identity=60.9756097560976, Blast_Score=360, Evalue=1e-101,
Organism=Escherichia coli, GI1789261, Length=289, Percent_Identity=37.3702422145329, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=25.8241758241758, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790768, Length=146, Percent_Identity=28.0821917808219, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34590; Mature: 34459

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGW
CCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
VRQITSKGMRSGLKASSLSTRLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNID
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCC
VDEMGQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDK
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHEEECCCCEEEEECCCC
ERKVPFSGKAKEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVN
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
SHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRA
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
KKK
CCC
>Mature Secondary Structure 
SESLPPQYEKHLTAFYEFLRNEKGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGW
CCCCCHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
VRQITSKGMRSGLKASSLSTRLSSLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNID
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCC
VDEMGQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDK
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHEEECCCCEEEEECCCC
ERKVPFSGKAKEWLGHWLQVRNQLANPEEKGLFVSKLGVRISHRNVQKRMAEWGMKQGVN
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCC
SHISPHKLRHSFATHMLESSGNLRAVQELLGHENISTTQIYTHLDFQHLAQAYDQAHPRA
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC
KKK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA