Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693686

Identifier: 209693686

GI number: 209693686

Start: 61632

End: 62159

Strand: Direct

Name: 209693686

Synonym: VSAL_I0057

Alternate gene names: NA

Gene position: 61632-62159 (Clockwise)

Preceding gene: 209693685

Following gene: 209693687

Centisome position: 1.85

GC content: 32.77

Gene sequence:

>528_bases
ATGAAAAAAAATATATTAAAAATTAGTTTAATTACTATTATTTCAGGTTGTAGCCATAGCCATACTATTGATATATATAC
ATGGGTTCCTGAAAACCAATCACCAAAAATAACAACAGAGAAAGACATTAATTACTGGAATAAAAAAGGATATTACGATG
GTGCTTGTGGTTGGACGTTAAGTACGAAGATTTCAATATTACCACCGCCAAATAGCCCTGATTATATATATGGCACTGAA
CAAATTTTTGAATATGATCTTAGTGGAAAAATAATTACTCAATGGGCAGCTCCTGCAAATTCATATCCAATAGCAATTCA
AGATGATTTGATGTTTATCGATAGTGGATTAGCAATAAGCACCGATGGACAACTAAAACAGATGACATTTAACAAGCAAA
AAGTGGTGTACTCATCCTGCCCTGAGAATTTAGACATTGATAATTCGGATTATTTAAGGTGTGCCATATTCAGCGACACG
CTATTTGTAAAAGACCGAAATATTGCTTATCAAGCTCCTTGTACTTAA

Upstream 100 bases:

>100_bases
ATAACTTTTCCGTTAGTACTTAACTTTCCCGTTAGTACTTAATAGCGGCAAAAATCACCCTCATATCATGTTGTTTAAAC
TCTATAATTAAGATAAATGT

Downstream 100 bases:

>100_bases
ATTTCAGCTATAAATACCACTAGTGACATTAGGGTCTACCCTAATGTCATGGCTTGAATTTTAACCTTAGAACTCCTTTG
TCATTACCTTTTTGTCATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE
QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT
LFVKDRNIAYQAPCT

Sequences:

>Translated_175_residues
MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE
QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT
LFVKDRNIAYQAPCT
>Mature_175_residues
MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTLSTKISILPPPNSPDYIYGTE
QIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAISTDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDT
LFVKDRNIAYQAPCT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19785; Mature: 19785

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTL
CCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEE
STKISILPPPNSPDYIYGTEQIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAIS
ECEEEEECCCCCCCEEEECHHEEEECCCCEEEEEECCCCCCCCEEEECCEEEEECCEEEE
TDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDTLFVKDRNIAYQAPCT
CCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCEEEECCCC
>Mature Secondary Structure
MKKNILKISLITIISGCSHSHTIDIYTWVPENQSPKITTEKDINYWNKKGYYDGACGWTL
CCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCEEE
STKISILPPPNSPDYIYGTEQIFEYDLSGKIITQWAAPANSYPIAIQDDLMFIDSGLAIS
ECEEEEECCCCCCCEEEECHHEEEECCCCEEEEEECCCCCCCCEEEECCEEEEECCEEEE
TDGQLKQMTFNKQKVVYSSCPENLDIDNSDYLRCAIFSDTLFVKDRNIAYQAPCT
CCCCEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA