Definition Aliivibrio salmonicida LFI1238 chromosome 1, complete genome.
Accession NC_011312
Length 3,325,165

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The map label for this gene is 209693664

Identifier: 209693664

GI number: 209693664

Start: 33193

End: 35412

Strand: Direct

Name: 209693664

Synonym: VSAL_I0031

Alternate gene names: NA

Gene position: 33193-35412 (Clockwise)

Preceding gene: 209693663

Following gene: 209693665

Centisome position: 1.0

GC content: 38.56

Gene sequence:

>2220_bases
ATGAAAGTAGATGATAGAAAATTTGTAAATGCGTATTATCCGTGGAATGAAGAATTAGCAAGAGAAGCGAAAGCGGATAC
CCCTCATCATGAGCCAATCAAAGAGAAACTGGTTGAGACCGCCGCGTTTGAATATTCGATTGAAATAGCTTGTACGCTTG
ATGAATTAAATACTTATCAAGTAGGTGCGTTTTTTCTAGGGAAAACGAAAGAAGAAGAGAGCATATCGTTATGGACAAAA
TCCCAAACTGATAAAGGGTTTAGCTTACTGACTGCAAGCGTAAAGGTAAATGAGCCTAAGAGCCTTACTCGTGAATTTTT
CATTTCAAGCGGTTACAGCCTGACTTTTAACGATGTGTCTCCTGTTAAAAAAGGCTCTGGCACTCATGCTGAGTCTTTTG
TTCTTATTAAACCTTCAATTCAAATCTATAACCGCTTGGCATGGCCTAAAGTCGGCTTCTTTTATCATTTCATTAATGAT
GAATTAGAGAATGAATACCCACTCTCTGGTGGTGATAAGTGGTCATTCAAAGTGACTTATTCAAAAGGAAAAACACTGTC
TTCTGACTTATTGTCAGAGCATGAATACGCTTTTATTTTATTGCCTTGGAAAATAGACAATACGGTTATCTCTCGCCAAC
ACTTACTGTATACCAAAGAGAAAATGACCCAAGAGCAATTGAGTGAGATAAACGATCAATGGCTCGATGAAAGCGCGTGT
CTGATTAATCCCGATGAAGTGGTTACTGCTCGTTCAGATAAAATTGTCCTGAGAGAGAAAGAAGACAATGGACGAATCAC
TTATACGGTTCAATCTGGTGATACCCTTGGCTTAATAGCGAAAAAGCAAGGCATTACGTATGATGGACTTCTGGCTTTAA
ATCCTCAGATAACGAACCCTGATTTAATTCAAGTGGATGATGTTGTAACAATAAAAGACACGCCTCCAGAGCAAGAAAGC
ATCCAGTTTCATGTGTGTAAAATCAAGTCAGAGACAGGTCAGCGTGAAACGTGGGGCGAAATCGCAGAGCAACATGGTAT
GGGTGCGAAAGAGTTGTATGATTTAAATGCAGATAACCCAATGCATAAAGACGGAGCCTTAGCGTTAGACAACGAATTAC
GAGTGAAGAACACAGCGCAGAGCGAAGCACTTGACGTCGTTTATAGAAACGCTCAAAGTCCAGAGGACGTGAGCGGTGAT
AAATGGGTATTTTCTTTTGCTAATGTGTGGAGTGTGATAGAGAAACCATTCTCAGACGTTGCCCATATGTTTGTGCAAGA
CGATACGGCTCTGAATAAAAACACGTGCGTTATTAAAGTCAATTCGATACGACTTCATTCTAAAATATTATCTGGCTCTG
ATGGACTTGAGGCGATAGCTCAAGAAAAGAAAGGAGCAATTAAGAAAGGCGATAAAGACGCGCCCAAGAGTAATGAAATC
AAAACCATTCAAGAGGCGTTACTTGCGCTTAATTTTGATTTAGGTAAGTACGGTGCCGACGGTGATTTTGGCAGCGGAAC
CGAACAAGCAGTAATAGATTTTCAGCGTGAGTTTGTGCCAACGCATGAAGTGCATCCTGAATATGAAATGAAAAAGTCTG
ATGGTGTAGTGGGAAATCAGACGTTACTAGCCTTAGATGAAGCTGTTACAATCGAATGGAAGTACATTAGAAAATGTAAA
TTAATGATTGACCATCACTTTATACAATTGTTAGAAGGAACAAAAAAAGAAGGTTATGTTCCAATGCCAGATAAGAGTCA
AAGTGGCGTTACTATTGGGAGTGGTTTTGACTTAGGTGCTCGAAATGTTAATGATTTAATTAGCATGGGGCTACCTGAAT
CATTGGTTGAAAAATTCACACCTTATTTAGGCTTAAAAAAATATGAGGCTGTTAATAAGTTGAAAGCATTACCTCTTTCA
CTTACGGAGGCCGATCTTTCTGTTGTAGAAGCAACAGTTAAAAAAAGTGAAACAGATAAGATTATAAAATTATTTAATTC
ATCAAGTAAGGTTAAGTTTGAGTGCTTGCCAGCTAACGCTCAAACAGTCGTAGCATCTGTTGCTTATCAATATGGTTATT
TACCGCGTAGAGCTGAAAAATTTTGGGAACAAGCTATTAATCAAGATTGGAATGGTATGTATGATAATTTAATGGCGTTT
GGTGATGATTTTGAAGTTAGACGACATAAAGAAGCTAAGTTAATTAAGGAGATTTTGTAG

Upstream 100 bases:

>100_bases
ATAGATCCCGTCACTCTGCCTAGAAATGAATTACATAGACAGGATTGAGTTTTGATAAAATAGTAGATTGATTTGGCAAT
TAACATAACTTGTGTATGCA

Downstream 100 bases:

>100_bases
TGAAAAAATTATTACTATTAATGTATGTTTTTAGTTGTTCGGTTTCTGCGTTTCCTATGAAGGATATTTATAATAATCTC
GATATCACATCGTTTAATAG

Product: cell wall degradation enzyme

Products: NA

Alternate protein names: VgrG Protein; LysM Domain Protein; Pesticin; Pesticin Domain Protein; Cell Wall Degradation Protein; S-Type Pyocin Domain-Containing Protein

Number of amino acids: Translated: 739; Mature: 739

Protein sequence:

>739_residues
MKVDDRKFVNAYYPWNEELAREAKADTPHHEPIKEKLVETAAFEYSIEIACTLDELNTYQVGAFFLGKTKEEESISLWTK
SQTDKGFSLLTASVKVNEPKSLTREFFISSGYSLTFNDVSPVKKGSGTHAESFVLIKPSIQIYNRLAWPKVGFFYHFIND
ELENEYPLSGGDKWSFKVTYSKGKTLSSDLLSEHEYAFILLPWKIDNTVISRQHLLYTKEKMTQEQLSEINDQWLDESAC
LINPDEVVTARSDKIVLREKEDNGRITYTVQSGDTLGLIAKKQGITYDGLLALNPQITNPDLIQVDDVVTIKDTPPEQES
IQFHVCKIKSETGQRETWGEIAEQHGMGAKELYDLNADNPMHKDGALALDNELRVKNTAQSEALDVVYRNAQSPEDVSGD
KWVFSFANVWSVIEKPFSDVAHMFVQDDTALNKNTCVIKVNSIRLHSKILSGSDGLEAIAQEKKGAIKKGDKDAPKSNEI
KTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHEVHPEYEMKKSDGVVGNQTLLALDEAVTIEWKYIRKCK
LMIDHHFIQLLEGTKKEGYVPMPDKSQSGVTIGSGFDLGARNVNDLISMGLPESLVEKFTPYLGLKKYEAVNKLKALPLS
LTEADLSVVEATVKKSETDKIIKLFNSSSKVKFECLPANAQTVVASVAYQYGYLPRRAEKFWEQAINQDWNGMYDNLMAF
GDDFEVRRHKEAKLIKEIL

Sequences:

>Translated_739_residues
MKVDDRKFVNAYYPWNEELAREAKADTPHHEPIKEKLVETAAFEYSIEIACTLDELNTYQVGAFFLGKTKEEESISLWTK
SQTDKGFSLLTASVKVNEPKSLTREFFISSGYSLTFNDVSPVKKGSGTHAESFVLIKPSIQIYNRLAWPKVGFFYHFIND
ELENEYPLSGGDKWSFKVTYSKGKTLSSDLLSEHEYAFILLPWKIDNTVISRQHLLYTKEKMTQEQLSEINDQWLDESAC
LINPDEVVTARSDKIVLREKEDNGRITYTVQSGDTLGLIAKKQGITYDGLLALNPQITNPDLIQVDDVVTIKDTPPEQES
IQFHVCKIKSETGQRETWGEIAEQHGMGAKELYDLNADNPMHKDGALALDNELRVKNTAQSEALDVVYRNAQSPEDVSGD
KWVFSFANVWSVIEKPFSDVAHMFVQDDTALNKNTCVIKVNSIRLHSKILSGSDGLEAIAQEKKGAIKKGDKDAPKSNEI
KTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHEVHPEYEMKKSDGVVGNQTLLALDEAVTIEWKYIRKCK
LMIDHHFIQLLEGTKKEGYVPMPDKSQSGVTIGSGFDLGARNVNDLISMGLPESLVEKFTPYLGLKKYEAVNKLKALPLS
LTEADLSVVEATVKKSETDKIIKLFNSSSKVKFECLPANAQTVVASVAYQYGYLPRRAEKFWEQAINQDWNGMYDNLMAF
GDDFEVRRHKEAKLIKEIL
>Mature_739_residues
MKVDDRKFVNAYYPWNEELAREAKADTPHHEPIKEKLVETAAFEYSIEIACTLDELNTYQVGAFFLGKTKEEESISLWTK
SQTDKGFSLLTASVKVNEPKSLTREFFISSGYSLTFNDVSPVKKGSGTHAESFVLIKPSIQIYNRLAWPKVGFFYHFIND
ELENEYPLSGGDKWSFKVTYSKGKTLSSDLLSEHEYAFILLPWKIDNTVISRQHLLYTKEKMTQEQLSEINDQWLDESAC
LINPDEVVTARSDKIVLREKEDNGRITYTVQSGDTLGLIAKKQGITYDGLLALNPQITNPDLIQVDDVVTIKDTPPEQES
IQFHVCKIKSETGQRETWGEIAEQHGMGAKELYDLNADNPMHKDGALALDNELRVKNTAQSEALDVVYRNAQSPEDVSGD
KWVFSFANVWSVIEKPFSDVAHMFVQDDTALNKNTCVIKVNSIRLHSKILSGSDGLEAIAQEKKGAIKKGDKDAPKSNEI
KTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHEVHPEYEMKKSDGVVGNQTLLALDEAVTIEWKYIRKCK
LMIDHHFIQLLEGTKKEGYVPMPDKSQSGVTIGSGFDLGARNVNDLISMGLPESLVEKFTPYLGLKKYEAVNKLKALPLS
LTEADLSVVEATVKKSETDKIIKLFNSSSKVKFECLPANAQTVVASVAYQYGYLPRRAEKFWEQAINQDWNGMYDNLMAF
GDDFEVRRHKEAKLIKEIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83252; Mature: 83252

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVDDRKFVNAYYPWNEELAREAKADTPHHEPIKEKLVETAAFEYSIEIACTLDELNTYQ
CCCCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCEE
VGAFFLGKTKEEESISLWTKSQTDKGFSLLTASVKVNEPKSLTREFFISSGYSLTFNDVS
EEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHHHHHHCCCCEEEECCCC
PVKKGSGTHAESFVLIKPSIQIYNRLAWPKVGFFYHFINDELENEYPLSGGDKWSFKVTY
CCCCCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHEEHHHHCCCCCCCCCCCEEEEEEEE
SKGKTLSSDLLSEHEYAFILLPWKIDNTVISRQHLLYTKEKMTQEQLSEINDQWLDESAC
CCCCCCHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LINPDEVVTARSDKIVLREKEDNGRITYTVQSGDTLGLIAKKQGITYDGLLALNPQITNP
EECCHHEEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCCC
DLIQVDDVVTIKDTPPEQESIQFHVCKIKSETGQRETWGEIAEQHGMGAKELYDLNADNP
CEEEECCEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHEEECCCCCC
MHKDGALALDNELRVKNTAQSEALDVVYRNAQSPEDVSGDKWVFSFANVWSVIEKPFSDV
CCCCCCEEECCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
AHMFVQDDTALNKNTCVIKVNSIRLHSKILSGSDGLEAIAQEKKGAIKKGDKDAPKSNEI
HHHHHCCCCCCCCCEEEEEEECEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
KTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHEVHPEYEMKKSDGVVGNQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TLLALDEAVTIEWKYIRKCKLMIDHHFIQLLEGTKKEGYVPMPDKSQSGVTIGSGFDLGA
EEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCC
RNVNDLISMGLPESLVEKFTPYLGLKKYEAVNKLKALPLSLTEADLSVVEATVKKSETDK
CCHHHHHHCCCCHHHHHHHCHHCCCHHHHHHHHHHHCCCEECHHHHHHHHHHHHHCHHHH
IIKLFNSSSKVKFECLPANAQTVVASVAYQYGYLPRRAEKFWEQAINQDWNGMYDNLMAF
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHC
GDDFEVRRHKEAKLIKEIL
CCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKVDDRKFVNAYYPWNEELAREAKADTPHHEPIKEKLVETAAFEYSIEIACTLDELNTYQ
CCCCCCCEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEEEEEEECCCCCEE
VGAFFLGKTKEEESISLWTKSQTDKGFSLLTASVKVNEPKSLTREFFISSGYSLTFNDVS
EEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHHHHHHCCCCEEEECCCC
PVKKGSGTHAESFVLIKPSIQIYNRLAWPKVGFFYHFINDELENEYPLSGGDKWSFKVTY
CCCCCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHEEHHHHCCCCCCCCCCCEEEEEEEE
SKGKTLSSDLLSEHEYAFILLPWKIDNTVISRQHLLYTKEKMTQEQLSEINDQWLDESAC
CCCCCCHHHHHCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LINPDEVVTARSDKIVLREKEDNGRITYTVQSGDTLGLIAKKQGITYDGLLALNPQITNP
EECCHHEEEECCCEEEEEEECCCCEEEEEEECCCEEEEEEECCCCCCCCEEEECCCCCCC
DLIQVDDVVTIKDTPPEQESIQFHVCKIKSETGQRETWGEIAEQHGMGAKELYDLNADNP
CEEEECCEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCHHHEEECCCCCC
MHKDGALALDNELRVKNTAQSEALDVVYRNAQSPEDVSGDKWVFSFANVWSVIEKPFSDV
CCCCCCEEECCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
AHMFVQDDTALNKNTCVIKVNSIRLHSKILSGSDGLEAIAQEKKGAIKKGDKDAPKSNEI
HHHHHCCCCCCCCCEEEEEEECEEEEHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
KTIQEALLALNFDLGKYGADGDFGSGTEQAVIDFQREFVPTHEVHPEYEMKKSDGVVGNQ
HHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
TLLALDEAVTIEWKYIRKCKLMIDHHFIQLLEGTKKEGYVPMPDKSQSGVTIGSGFDLGA
EEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCC
RNVNDLISMGLPESLVEKFTPYLGLKKYEAVNKLKALPLSLTEADLSVVEATVKKSETDK
CCHHHHHHCCCCHHHHHHHCHHCCCHHHHHHHHHHHCCCEECHHHHHHHHHHHHHCHHHH
IIKLFNSSSKVKFECLPANAQTVVASVAYQYGYLPRRAEKFWEQAINQDWNGMYDNLMAF
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHC
GDDFEVRRHKEAKLIKEIL
CCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA