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The map label for this gene is rbgA [H]

Identifier: 203284541

GI number: 203284541

Start: 693176

End: 694051

Strand: Reverse

Name: rbgA [H]

Synonym: BDU_646

Alternate gene names: 203284541

Gene position: 694051-693176 (Counterclockwise)

Preceding gene: 203284544

Following gene: 203284540

Centisome position: 74.5

GC content: 24.66

Gene sequence:

>876_bases
ATGAAATTAAGATATAATTTAAAAATGTCAAATAAAATCAACTGGTTTCCAGGCCATATGAAACGGGCCTTAGAGTTAAT
ACAGATAAATATCAAAAAAACAAATATTGTATTAGAAATACTTGATGCCAGGGCTCCATTTAGTAGCAAAAACCCGCTCA
TAGAAACAATAATCAAAAACTCAAATAAAGATAAAATAATACTTTTAAATAAATCAGATCTTGTCCACGAAGGAGAAATT
CTAAAATGGAAAAAATATTTTGAAACTCTTGGTAATAATGTATTAATCACAAATATATATAAAAAAGGAATAAAAAAACA
AATAATAAACAATATAAAAAAAATAGCTAACATAAAAAAAATTAAAACTTATAAAGAAAAAATAAAAGTTTTAGTAATTG
GAGTCCCAAACGTTGGAAAATCATCAATAATTAATCTATTAGTAGGAAAAAAAAGTACAAGTGTTGCAAATAAACCAGGA
CACACAAAAAATATACAAATATTAAAAGTAAATGAAGATATTAATCTCTTTGACATGCCAGGAATACTATGGCACAACCT
AGAAAATCAAGAAATAGCAAAAAAATTAGCAATATTAGACATGATCAAAAATGAAATTATAGATAATACAGAACTTGCCC
TATATCTACTTAAAGAAATGCATATAAAAAACAAAACCAAATTGATAGGAAAATATAATATAATATCAACAGACGCACTT
AAAATTTTAGAAGAATTTGCAACAATAAGAGGATTTATCAATAAAAAATATGGAACGGATATTGAGAGTGCATCAAAAAT
ACTGATAAAAGAATACAGAGAAGGAAAATTTGGAAAAATTATACTTGACTTAAGACCTGATAACAGCAATAAATAA

Upstream 100 bases:

>100_bases
GAGCTTCTAAAAAAGCTTAAAGATATAAATTTATAATATTTTTACAAAAGATACAATTAATCAACAATTTAACATAAAAA
AAACATATATTTCACATACA

Downstream 100 bases:

>100_bases
AATCATTTACATAAGCATTAATATAAAGTATAATCTAGTCTCATGTGGCTTATAATAGGCTCATACAAAAAGGAGGGTCC
CATTAGTTGGATAATTACAT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKLRYNLKMSNKINWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLVHEGEI
LKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKKIKTYKEKIKVLVIGVPNVGKSSIINLLVGKKSTSVANKPG
HTKNIQILKVNEDINLFDMPGILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNIISTDAL
KILEEFATIRGFINKKYGTDIESASKILIKEYREGKFGKIILDLRPDNSNK

Sequences:

>Translated_291_residues
MKLRYNLKMSNKINWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLVHEGEI
LKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKKIKTYKEKIKVLVIGVPNVGKSSIINLLVGKKSTSVANKPG
HTKNIQILKVNEDINLFDMPGILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNIISTDAL
KILEEFATIRGFINKKYGTDIESASKILIKEYREGKFGKIILDLRPDNSNK
>Mature_291_residues
MKLRYNLKMSNKINWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKNSNKDKIILLNKSDLVHEGEI
LKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKKIKTYKEKIKVLVIGVPNVGKSSIINLLVGKKSTSVANKPG
HTKNIQILKVNEDINLFDMPGILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNIISTDAL
KILEEFATIRGFINKKYGTDIESASKILIKEYREGKFGKIILDLRPDNSNK

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=307, Percent_Identity=29.9674267100977, Blast_Score=122, Evalue=5e-28,
Organism=Homo sapiens, GI7019419, Length=281, Percent_Identity=30.9608540925267, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI45643129, Length=263, Percent_Identity=27.7566539923954, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI45643127, Length=263, Percent_Identity=27.7566539923954, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI45593130, Length=263, Percent_Identity=27.7566539923954, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI296317324, Length=181, Percent_Identity=29.8342541436464, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI9506611, Length=181, Percent_Identity=29.8342541436464, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17534827, Length=268, Percent_Identity=28.7313432835821, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI25143545, Length=283, Percent_Identity=25.4416961130742, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535155, Length=281, Percent_Identity=24.5551601423488, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI193211047, Length=227, Percent_Identity=29.0748898678414, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71982363, Length=184, Percent_Identity=27.1739130434783, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563985, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71990926, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32563983, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321339, Length=306, Percent_Identity=25.8169934640523, Blast_Score=99, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6324381, Length=273, Percent_Identity=29.6703296703297, Blast_Score=89, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6320842, Length=277, Percent_Identity=27.4368231046931, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=283, Percent_Identity=25.4416961130742, Blast_Score=63, Evalue=6e-11,
Organism=Drosophila melanogaster, GI85815858, Length=306, Percent_Identity=27.4509803921569, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI28572990, Length=274, Percent_Identity=28.8321167883212, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19922460, Length=268, Percent_Identity=26.1194029850746, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33424; Mature: 33424

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRYNLKMSNKINWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKN
CEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEHHEEEEEEECCCCCCCCCCCHHHHHHCC
SNKDKIILLNKSDLVHEGEILKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKK
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
IKTYKEKIKVLVIGVPNVGKSSIINLLVGKKSTSVANKPGHTKNIQILKVNEDINLFDMP
HHHHHHCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECC
GILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNIISTDAL
CHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEECHHHH
KILEEFATIRGFINKKYGTDIESASKILIKEYREGKFGKIILDLRPDNSNK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MKLRYNLKMSNKINWFPGHMKRALELIQINIKKTNIVLEILDARAPFSSKNPLIETIIKN
CEEEEEEEECCCCCCCCHHHHHHHHHHHEEEEHHEEEEEEECCCCCCCCCCCHHHHHHCC
SNKDKIILLNKSDLVHEGEILKWKKYFETLGNNVLITNIYKKGIKKQIINNIKKIANIKK
CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
IKTYKEKIKVLVIGVPNVGKSSIINLLVGKKSTSVANKPGHTKNIQILKVNEDINLFDMP
HHHHHHCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECC
GILWHNLENQEIAKKLAILDMIKNEIIDNTELALYLLKEMHIKNKTKLIGKYNIISTDAL
CHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEECHHHH
KILEEFATIRGFINKKYGTDIESASKILIKEYREGKFGKIILDLRPDNSNK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]