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The map label for this gene is fliN [H]

Identifier: 203284198

GI number: 203284198

Start: 303797

End: 304141

Strand: Reverse

Name: fliN [H]

Synonym: BDU_280

Alternate gene names: 203284198

Gene position: 304141-303797 (Counterclockwise)

Preceding gene: 203284199

Following gene: 203284197

Centisome position: 32.64

GC content: 32.46

Gene sequence:

>345_bases
ATGGATGTAGATGATAAGAATGATTTTAGTGAGGAAAAACCTGAGATAAAGGGTGTTAAACTTCCTGATTTGATTGATAG
TTTGCCTGAAGGTGTTGATCCTAGCAATTTTGGTCTTTTAATGGATGTTTCTATGCAAGTTACAGTAGAACTTGGTAGGA
CTGAACGTAAAATAAAAGATATACTTGCTATGTCTGAAGGAACGATCATTACACTTGATAAACTTGCTGGTGAACCTGTA
GATATTTTGGTAAATGGAAAAATAGTGGCTAAAGGAGAGGTTGTTGTAATTGATGAGAATTTTGGTGTTAGAATTACCGA
AATAATTAAAATTAAAAATGAATAG

Upstream 100 bases:

>100_bases
GGTGAGGTAGAGGATTTTGATTTGTTGAAAGAACTTACGGAAGAAGTTGAATAACTTAAAGAGTTTTGATGTTTTAATGA
ATTTAATAGAGAGGTAAATA

Downstream 100 bases:

>100_bases
GTTAATTTTATTTTTCACTTTTATTGTATTTTTTGCAGAAAATTTATTTGCGCAGGATAATGAGAGTGATTTAAATGTTA
CTTCTAAATTAGAAAATGAA

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MDVDDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPV
DILVNGKIVAKGEVVVIDENFGVRITEIIKIKNE

Sequences:

>Translated_114_residues
MDVDDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPV
DILVNGKIVAKGEVVVIDENFGVRITEIIKIKNE
>Mature_114_residues
MDVDDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKDILAMSEGTIITLDKLAGEPV
DILVNGKIVAKGEVVVIDENFGVRITEIIKIKNE

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=71, Percent_Identity=54.9295774647887, Blast_Score=89, Evalue=7e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 12537; Mature: 12537

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVDDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKD
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHH
ILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDENFGVRITEIIKIKNE
HHHCCCCCEEEECCCCCCCEEEEECCEEEECCEEEEEECCCCEEEEEEEEEECC
>Mature Secondary Structure
MDVDDKNDFSEEKPEIKGVKLPDLIDSLPEGVDPSNFGLLMDVSMQVTVELGRTERKIKD
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHH
ILAMSEGTIITLDKLAGEPVDILVNGKIVAKGEVVVIDENFGVRITEIIKIKNE
HHHCCCCCEEEECCCCCCCEEEEECCEEEECCEEEEEECCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]