| Definition | Borrelia duttonii Ly, complete genome. |
|---|---|
| Accession | NC_011229 |
| Length | 931,674 |
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The map label for this gene is yomI [H]
Identifier: 203284180
GI number: 203284180
Start: 284503
End: 286653
Strand: Reverse
Name: yomI [H]
Synonym: BDU_262
Alternate gene names: 203284180
Gene position: 286653-284503 (Counterclockwise)
Preceding gene: 203284181
Following gene: 203284179
Centisome position: 30.77
GC content: 25.48
Gene sequence:
>2151_bases GTGAAAAAAGTAATGTTTAAGAAAATTATTTATTTGTTTTTATTGAATTTATTATCTTGTTCATTTGTGAAAGAATCTTT AAGTAGCAATATTTTAAAAAAAAGTATCAATAGTTTTGATTTAAATCATTTAAATTGGTTGTGGAATTTTGACTATGTAG GACAAAATTTTGATAAATATTTTGGTATAGATTCAGATTCTTATGTATATGTTGCTTATCTTTTCAAAAAAATAGGGTAT GATGAAAAATTTAGAGAATATATGCACAAAGCAATAAATAGTAATAATAATATTGCATCTCAATTTGCTGGTGTAAAACT TCTTGAATATTATAATTCTAGAAGAGAATATTATGAGGCAGAACTTGTTGGTCGAAAACTTTATAACAAATATAATGATA ATAAATTCATTATATTAGGATATTTTAAAAGTCTTTATTGGCAGAAAAAGAATAATGAAGCTCTTTTAGTTTTAAATAAG CTAGAAAAAATGGATTTCATGCAGGCACAAGAAAATGAAAATCTTTTATTTAAAGCAGTGCTTTATTTTAATATTTCTGA TATTAATACGTCATTAATTTATTTCAAGAAATTGTTTGAGAATTTGCCGGCAGAATATTTGCATGTAAGGGCTCATGATT ATCTTGTTCTTGAAGGGAAAGATAATCTTTTAAATTCAACTTTTTTAAGTCTTGTTAAATTTAAATCTTTGGTTGCTAAT GGTGATTTTAAAGGTGCTGTTAATATATTAGATGATAGTTTTAAGAAGTATTATAATAATTTTATTTTTTTAAATGATGT TTATAAGACTTTTGTAAGTTTAGGTTATATTAACAAGGCATTATCTTTTTTTAGTAATTTAGATAGTGTTTATAAAGATT ATTATTTGGGGCTCCTTAATTTAAAATTAAAAAAAGATGTAGGTTTTGTGACAATACTTAAATATTTGGAAAATTCTTCT ATTATAAATGAACCTTATAGATTAGAAATGCTTAATGAAATTTTTAGAAATTTCATATTTATGAAAAATACAAGAAATTA TTTTTCTAAAAACATAGCTAATTTTTATACAAGTAAAGATAAGGGTAATTTTGCTTTTATTAAGGTATTAGATGAATATA TTTTAGAAGCTGTACAACTTGGAGATTATGATAATTTATATTTACTATATTATAATGGTCAAAATGTTATTGACAATGCT GTTTTAGCAAGGCTTGCTTTTCTTAATGCTAGACTTATATATCACAAATTTATTAAATCTCAGTCAGTCGGTGAGTATAG AGAGCTTTTGCGTTCTGCTATTAAATATGATCAAATATCTTATGCATCGTTTATGAGTAGGTATTTGCTTGATCAAAATA TTAATGATTTGTTTGAAAATGCTTTGGATATAAATTATGATCAGTCCGATTATGAAAGGTTTTTGGAAGGGTTTTTAAAA TTTAATTTGCATTCTTATGTTAGTGTGTTTGTTGCCAATGATTTTAAAAATGGTTATAGATTTTCTCCTAATTTTTACCG TAATCTTTACGATGAATTTGTGAAACATGAATATTATTATGAATCTATACTTGCTATTAATTACCTTGTAAGGCAAGATT TTTCGGCTTTAAATAAAGATGATTATAAGCGTCTCTATCCATGTTTGTACACGGCTTTAATTAAATCTTGGTCAGGGAAA AGGGAACTTGAGTCGAGTCTTGTATTTTCTTTAATAAAAGCTGAGAGTAGTTTTAAAAGAGATGCTGTATCTAAACCTGG TGCTATCGGACTTATGCAAATTATGCCTGCAACATCAGCTGATGTATCTAGAGAAATCAAATATTATAAATACTATTCTT ATGATTTGAAACAGCCAAAGGATAATGTTATTATTGGGACTCATTATTTACGTAAAAGAATAGACATGTTGGAAGATGTG TATAAGGCTCTTGCATCTTATAATGGTGGTATTGGAAATGTTAGGAAATGGGAAAAAGATTATGGGCATTTGCCCAAAGA AATTTTTATCGAAGCTATTCCTTTTGGACAAACTAGGAATTATATTAAAAAAATATTAGTTTATTCTGTATTATATGATG CTTTATATGAAAGAAAGGGAATGGATTTTATTATAGAGTATATTATGGGTAAATTTTCCAAACGTTTTTAG
Upstream 100 bases:
>100_bases ATATTTTTTTCATTGTTTTTGATTTTTTCTAAAATATTAAATCCTAAAAATTTTACAATTTCTTATTGTTCTTTTTATAA AGAAGAAAAAATTACTAGAT
Downstream 100 bases:
>100_bases GTTGTGAAGTTAAATGGATAATATTTTAAGGGTTATTATTTTAGGTTTTGTTCAAGGCATTTCTGAGTTTTTGCCTATAT CTAGTTCAGGCCATTTGTTA
Product: hypothetical protein
Products: 1,6-Anhydrobond [C]
Alternate protein names: NA
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF
Sequences:
>Translated_716_residues MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF >Mature_716_residues MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKYFGIDSDSYVYVAYLFKKIGY DEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEAELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNK LEKMDFMQAQENENLLFKAVLYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLNLKLKKDVGFVTILKYLENSS IINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKDKGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNA VLARLAFLNARLIYHKFIKSQSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKDDYKRLYPCLYTALIKSWSGK RELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSADVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDV YKALASYNGGIGNVRKWEKDYGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF
Specific function: Murein-Degrading Enzyme. Catalyzes The Cleavage Of The Glycosidic Bonds Between N-Acetylmuramic Acid And N- Acetylglucosamine Residues In Peptidoglycan. May Play A Role In Recycling Of Muropeptides During Cell Elongation And/Or Cell Division. [C]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasmic Protein. Tightly Associated With The Murein Sacculus [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 10 TPR repeats [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=163, Percent_Identity=32.5153374233129, Blast_Score=82, Evalue=9e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR008258 - InterPro: IPR016047 - InterPro: IPR010090 - InterPro: IPR000189 [H]
Pfam domain/function: PF01551 Peptidase_M23; PF10145 PhageMin_Tail; PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 84936; Mature: 84936
Theoretical pI: Translated: 9.34; Mature: 9.34
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHH FGIDSDSYVYVAYLFKKIGYDEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEA CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNKLEKMDFMQAQENENLLFKAV HHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE LYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN EEEEECCCCHHHHHHHHHHHHCCHHHEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCC GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLN CCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKLKKDVGFVTILKYLENSSIINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKD EEEHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCC KGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNAVLARLAFLNARLIYHKFIKS CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC QSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKD HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DYKRLYPCLYTALIKSWSGKRELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCC DVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDVYKALASYNGGIGNVRKWEKD HHHHHHHHHEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH YGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKVMFKKIIYLFLLNLLSCSFVKESLSSNILKKSINSFDLNHLNWLWNFDYVGQNFDKY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCHHHH FGIDSDSYVYVAYLFKKIGYDEKFREYMHKAINSNNNIASQFAGVKLLEYYNSRREYYEA CCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ELVGRKLYNKYNDNKFIILGYFKSLYWQKKNNEALLVLNKLEKMDFMQAQENENLLFKAV HHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEE LYFNISDINTSLIYFKKLFENLPAEYLHVRAHDYLVLEGKDNLLNSTFLSLVKFKSLVAN EEEEECCCCHHHHHHHHHHHHCCHHHEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCC GDFKGAVNILDDSFKKYYNNFIFLNDVYKTFVSLGYINKALSFFSNLDSVYKDYYLGLLN CCCCCHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKLKKDVGFVTILKYLENSSIINEPYRLEMLNEIFRNFIFMKNTRNYFSKNIANFYTSKD EEEHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCC KGNFAFIKVLDEYILEAVQLGDYDNLYLLYYNGQNVIDNAVLARLAFLNARLIYHKFIKS CCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC QSVGEYRELLRSAIKYDQISYASFMSRYLLDQNINDLFENALDINYDQSDYERFLEGFLK CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH FNLHSYVSVFVANDFKNGYRFSPNFYRNLYDEFVKHEYYYESILAINYLVRQDFSALNKD HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH DYKRLYPCLYTALIKSWSGKRELESSLVFSLIKAESSFKRDAVSKPGAIGLMQIMPATSA HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCCCCC DVSREIKYYKYYSYDLKQPKDNVIIGTHYLRKRIDMLEDVYKALASYNGGIGNVRKWEKD HHHHHHHHHEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH YGHLPKEIFIEAIPFGQTRNYIKKILVYSVLYDALYERKGMDFIIEYIMGKFSKRF HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]