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The map label for this gene is 197120320

Identifier: 197120320

GI number: 197120320

Start: 4495702

End: 4496901

Strand: Direct

Name: 197120320

Synonym: Gbem_3959

Alternate gene names: NA

Gene position: 4495702-4496901 (Clockwise)

Preceding gene: 197120319

Following gene: 197120321

Centisome position: 97.41

GC content: 59.67

Gene sequence:

>1200_bases
ATGACCCGCCCCGCAGATCTTCCCATCCGCGTCAAATTCTTCGGACTGATGTCGCTACTTTTAATCGCCCTCTTGCTGGC
AAGCGGCCTCTTCATCTACAACCGGCAGAAAGAATTCATCATCAGGTTCGCCGTCGACAACGCCCGCAGCTTCGCCACCA
CCGTAATAGAGACCCGCGAGTACATGTCCTCCGTGGTCAGGGGGGAGCCTGAACAAAACTACAACCTGGTGCCCCAGGTG
GTGGCCACACAGGTCGCGAAAAGGGTCACCCAAAACAGCAAGTTCTACGTGCGCCAGGTCTCGCTGCGCTACCGCAACCC
CGGCAACAAACCGGACACCTACGAGACAAAGCAACTGCAGTACTTCATCAACAACCCCAAGGCCGAGATCTACGACATCG
TGCAAAGCGGCGAGATCAGCCTCTTCCGTTACCTGCAGCCGATGCGCGCCACCGCCTCCTGCCTCGAATGCCACGGCAGC
TACGAAACCGCACCCGATTTCGTGAAGAAGCGCTTCCCCCCCGGCCACTATTCCTACAACTACAAGGTGGGCGAGGTGAT
CGGGGCGGTCTCGGTCAGCATCCCGGTCAAGGACCTCTACGCCCAACTGGGTGCAAACCTCAAACTCGACCTCCTCTTCC
GTGGCATGGTCTACGTGATCGTCATCCTGGTGATGGGATTCATCATGAGCCGCCAGATCCTAAACCCCATCAAGCTCCTC
TCCGAACGCATGATCTCGGTGACCCGCACCGGCAACTTCAAAGATAAGCTGCCGCAGAAAACCAGGGACGAAATCGGCAT
GCTGATCGGTTCCTTCAACGAGATGATGGACGAGCTCTCCAGCCGCACCGTCCAGTCGAAGGAGGCGGACGAGCGCTACC
GCCGCTTCATCGAGGTGGCCGCCTCGGCGGTGATCACCTTCCTCAAGGATGGCAAGATCGTCATCGCCAACCAGAAAGCC
GAGTCCCTCTTCGGGCGCTCGCGGCAGGAACTGCTGGGGGAATCGATCTTCGGCTTTCTGGAGGAGGGGGCCGCGCTCAA
GGACAGGCTTTCCACGCAGGCGGAGTTCCGGGACGAAGCCTCCCGCCAGATAGTCAACGGCGTCGGCGGGAAACGGACGG
AGGTGGAAATGGTGCTCTCCGTTTCCAGGACGGACCGGGAGCCGATGTTCACCGCCATTCTCAGGGAGCGCAGGGGATAA

Upstream 100 bases:

>100_bases
CCTTGGGGGCCTGCCGGCCGTAGCCCTGGCGAAGGCCGGTTGCGCATCCCCTCCCCTCCGCTATACTTTCCCCTTTAGTT
CAATGAGATTAGGAGGATGC

Downstream 100 bases:

>100_bases
GGGCGCGGCCGCGCGGGAAAGTTTGCAGCGCGGCTGCCGATTATGCTAGAGTGTGCCGATCATCGGCAAGGAGAACTCAT
TAAATGGCCAAAGCAGGAAA

Product: sensor protein, HAMP/PAS domain-containing heme-binding site

Products: NA

Alternate protein names: PAS/PAC Sensor Protein; Sensor With HAMP Domain Protein; Two-Component Sensor Histidine Kinase; Sensor Histidine Kinase; Histidine Kinase; Sensor Protein; Methyl-Accepting Chemotaxis Protein; Two-Component System Sensory/Regulatory Protein; Sensory Box Protein; HAMP Domain-Containing Protein; Chemotaxis Sensory Transducer; Integral Membrane Sensor Hybrid Histidine Kinase; Mcp-Domain Signal Transduction Protein; Methyl-Accepting Chemotaxis Sensory Transducer; PasGgdef; Sensor With HAMP Domain; Multi-Sensor Signal Transduction Histidine Kinase

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTRPADLPIRVKFFGLMSLLLIALLLASGLFIYNRQKEFIIRFAVDNARSFATTVIETREYMSSVVRGEPEQNYNLVPQV
VATQVAKRVTQNSKFYVRQVSLRYRNPGNKPDTYETKQLQYFINNPKAEIYDIVQSGEISLFRYLQPMRATASCLECHGS
YETAPDFVKKRFPPGHYSYNYKVGEVIGAVSVSIPVKDLYAQLGANLKLDLLFRGMVYVIVILVMGFIMSRQILNPIKLL
SERMISVTRTGNFKDKLPQKTRDEIGMLIGSFNEMMDELSSRTVQSKEADERYRRFIEVAASAVITFLKDGKIVIANQKA
ESLFGRSRQELLGESIFGFLEEGAALKDRLSTQAEFRDEASRQIVNGVGGKRTEVEMVLSVSRTDREPMFTAILRERRG

Sequences:

>Translated_399_residues
MTRPADLPIRVKFFGLMSLLLIALLLASGLFIYNRQKEFIIRFAVDNARSFATTVIETREYMSSVVRGEPEQNYNLVPQV
VATQVAKRVTQNSKFYVRQVSLRYRNPGNKPDTYETKQLQYFINNPKAEIYDIVQSGEISLFRYLQPMRATASCLECHGS
YETAPDFVKKRFPPGHYSYNYKVGEVIGAVSVSIPVKDLYAQLGANLKLDLLFRGMVYVIVILVMGFIMSRQILNPIKLL
SERMISVTRTGNFKDKLPQKTRDEIGMLIGSFNEMMDELSSRTVQSKEADERYRRFIEVAASAVITFLKDGKIVIANQKA
ESLFGRSRQELLGESIFGFLEEGAALKDRLSTQAEFRDEASRQIVNGVGGKRTEVEMVLSVSRTDREPMFTAILRERRG
>Mature_398_residues
TRPADLPIRVKFFGLMSLLLIALLLASGLFIYNRQKEFIIRFAVDNARSFATTVIETREYMSSVVRGEPEQNYNLVPQVV
ATQVAKRVTQNSKFYVRQVSLRYRNPGNKPDTYETKQLQYFINNPKAEIYDIVQSGEISLFRYLQPMRATASCLECHGSY
ETAPDFVKKRFPPGHYSYNYKVGEVIGAVSVSIPVKDLYAQLGANLKLDLLFRGMVYVIVILVMGFIMSRQILNPIKLLS
ERMISVTRTGNFKDKLPQKTRDEIGMLIGSFNEMMDELSSRTVQSKEADERYRRFIEVAASAVITFLKDGKIVIANQKAE
SLFGRSRQELLGESIFGFLEEGAALKDRLSTQAEFRDEASRQIVNGVGGKRTEVEMVLSVSRTDREPMFTAILRERRG

Specific function: Unknown

COG id: COG2770

COG function: function code T; FOG: HAMP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45420; Mature: 45289

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50885 HAMP ; PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPADLPIRVKFFGLMSLLLIALLLASGLFIYNRQKEFIIRFAVDNARSFATTVIETRE
CCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCHHEEEEEECCCHHHHHHHHHHHHH
YMSSVVRGEPEQNYNLVPQVVATQVAKRVTQNSKFYVRQVSLRYRNPGNKPDTYETKQLQ
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEHCCCCCCCCCCCCHHHHH
YFINNPKAEIYDIVQSGEISLFRYLQPMRATASCLECHGSYETAPDFVKKRFPPGHYSYN
HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEC
YKVGEVIGAVSVSIPVKDLYAQLGANLKLDLLFRGMVYVIVILVMGFIMSRQILNPIKLL
CCHHHHHHHHEECCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SERMISVTRTGNFKDKLPQKTRDEIGMLIGSFNEMMDELSSRTVQSKEADERYRRFIEVA
HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASAVITFLKDGKIVIANQKAESLFGRSRQELLGESIFGFLEEGAALKDRLSTQAEFRDEA
HHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SRQIVNGVGGKRTEVEMVLSVSRTDREPMFTAILRERRG
HHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TRPADLPIRVKFFGLMSLLLIALLLASGLFIYNRQKEFIIRFAVDNARSFATTVIETRE
CCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCHHEEEEEECCCHHHHHHHHHHHHH
YMSSVVRGEPEQNYNLVPQVVATQVAKRVTQNSKFYVRQVSLRYRNPGNKPDTYETKQLQ
HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEHCCCCCCCCCCCCHHHHH
YFINNPKAEIYDIVQSGEISLFRYLQPMRATASCLECHGSYETAPDFVKKRFPPGHYSYN
HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEC
YKVGEVIGAVSVSIPVKDLYAQLGANLKLDLLFRGMVYVIVILVMGFIMSRQILNPIKLL
CCHHHHHHHHEECCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SERMISVTRTGNFKDKLPQKTRDEIGMLIGSFNEMMDELSSRTVQSKEADERYRRFIEVA
HHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASAVITFLKDGKIVIANQKAESLFGRSRQELLGESIFGFLEEGAALKDRLSTQAEFRDEA
HHHHHHHHCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
SRQIVNGVGGKRTEVEMVLSVSRTDREPMFTAILRERRG
HHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA