| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119438
Identifier: 197119438
GI number: 197119438
Start: 3552863
End: 3554035
Strand: Direct
Name: 197119438
Synonym: Gbem_3067
Alternate gene names: NA
Gene position: 3552863-3554035 (Clockwise)
Preceding gene: 197119437
Following gene: 197119439
Centisome position: 76.98
GC content: 50.9
Gene sequence:
>1173_bases ATGTCGACGCTTCCACCTTACCAAATCCCAACTAGCATGGCAGAGTCTGTAACACGCCATGCGCAAAACCCACCTATATC AGAATCTCTCTTTCTCTCCTGCGGTATCGACACGCTCGACCTTGGGCTGTATGTCTCCTGGGACACCAGATGGAACTCCA CAAAGGCAGGCCTTGAGGATAAAAAGTCTGCTGCACAACAGACGACCGAACTTCTCGACCAGACAGACATAGGAAGAGAA TTTCTGCATCATCCGAGCGGCAAGGCTCCTAATTACCGCTATCAACTGCACTTCCCTGAATATCGCGTATACATCGCCAT TTCCGACAAGCCCGGCAAATCCCCTAATGTCTATGTCACCATAAAGGCAGAAACCCTCTGGCACGTTGAGTTCCCTACAA TACTTGAACTCTTGGAGTTCGACCTCGACAGCTTCGGCGGAACAATCGAGCGCATCCAACCTAGCAGGGTTGACTTGTGC GCGGACTTCAGAATCAATCCGCCACCCACATTGCAATTCATACAACAGCATCGGGTGTCGCGTAGCACCATGATACGCCC CTACCTGAGCGGCGAGACCCTGGAAACATTCTATTCTGGCTCGCCATCCTCACCGGTTCAAATCCGCATCTATGACAAGG GCAAGGAAATCCTGAAAACCAACAAACAATGGTTCCTTCCCATTTGGGGAGTAGATACGCCTGAAGGCGTTTGGCGAGTT GAATTCCAATTGCGGCGTACATTTCTCCACCAATACAGGATCAAGACCATAGAAGACCTGTGGGGCAAGATCGGGACCAT ATGGGAGTACCTGACTGCGGAATGGTTCTCATTGAGACTCCCCGACAACGAGAAGGCAGAACGGCGAACCATTCATCCCT GGTGGTTATTAGTCCAGGAATGCAGTGAGCGATTCGGGGGGATGAGCGAGGTAAGACGCACATACACCACTGACACGGTA GAGCCTATTCAGAAGACACTTGCTCATATCTGCGGACGGCTCGTTTCCATAGCTGCGCAAGAAGGCATTAAGGATAGGAT GAAAGCCATTCTGCACCTGGAGGAACTTATCTACCAACGGATGGATGAAGAAAAATTCCGAAGCGAGTACAAGAAGAAGG CGATAAAGCTCGGTTATCGCGGTGAGTTGGGAGGGGCAGAATATGAGGGGTGA
Upstream 100 bases:
>100_bases GGCCCCATCACCTACTCACGCCTTGTAGCTAGCCATTCCCTCTATGGGTGAAGCAAGCCATTGGCAATTTCCATGTGCTT ATGCACAGAAGGAGTTGTTT
Downstream 100 bases:
>100_bases TCCTGAACTGCTGACCGTGGAGGAATTTGCCAAACGGATGAAGGTATCCAGAACAACGGTATTCGGATGGCTGAAAAGTG GGGTTCTCAGTGAAGGGGTG
Product: plasmid replication initiation factor-like protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MSTLPPYQIPTSMAESVTRHAQNPPISESLFLSCGIDTLDLGLYVSWDTRWNSTKAGLEDKKSAAQQTTELLDQTDIGRE FLHHPSGKAPNYRYQLHFPEYRVYIAISDKPGKSPNVYVTIKAETLWHVEFPTILELLEFDLDSFGGTIERIQPSRVDLC ADFRINPPPTLQFIQQHRVSRSTMIRPYLSGETLETFYSGSPSSPVQIRIYDKGKEILKTNKQWFLPIWGVDTPEGVWRV EFQLRRTFLHQYRIKTIEDLWGKIGTIWEYLTAEWFSLRLPDNEKAERRTIHPWWLLVQECSERFGGMSEVRRTYTTDTV EPIQKTLAHICGRLVSIAAQEGIKDRMKAILHLEELIYQRMDEEKFRSEYKKKAIKLGYRGELGGAEYEG
Sequences:
>Translated_390_residues MSTLPPYQIPTSMAESVTRHAQNPPISESLFLSCGIDTLDLGLYVSWDTRWNSTKAGLEDKKSAAQQTTELLDQTDIGRE FLHHPSGKAPNYRYQLHFPEYRVYIAISDKPGKSPNVYVTIKAETLWHVEFPTILELLEFDLDSFGGTIERIQPSRVDLC ADFRINPPPTLQFIQQHRVSRSTMIRPYLSGETLETFYSGSPSSPVQIRIYDKGKEILKTNKQWFLPIWGVDTPEGVWRV EFQLRRTFLHQYRIKTIEDLWGKIGTIWEYLTAEWFSLRLPDNEKAERRTIHPWWLLVQECSERFGGMSEVRRTYTTDTV EPIQKTLAHICGRLVSIAAQEGIKDRMKAILHLEELIYQRMDEEKFRSEYKKKAIKLGYRGELGGAEYEG >Mature_389_residues STLPPYQIPTSMAESVTRHAQNPPISESLFLSCGIDTLDLGLYVSWDTRWNSTKAGLEDKKSAAQQTTELLDQTDIGREF LHHPSGKAPNYRYQLHFPEYRVYIAISDKPGKSPNVYVTIKAETLWHVEFPTILELLEFDLDSFGGTIERIQPSRVDLCA DFRINPPPTLQFIQQHRVSRSTMIRPYLSGETLETFYSGSPSSPVQIRIYDKGKEILKTNKQWFLPIWGVDTPEGVWRVE FQLRRTFLHQYRIKTIEDLWGKIGTIWEYLTAEWFSLRLPDNEKAERRTIHPWWLLVQECSERFGGMSEVRRTYTTDTVE PIQKTLAHICGRLVSIAAQEGIKDRMKAILHLEELIYQRMDEEKFRSEYKKKAIKLGYRGELGGAEYEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45285; Mature: 45154
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLPPYQIPTSMAESVTRHAQNPPISESLFLSCGIDTLDLGLYVSWDTRWNSTKAGLED CCCCCCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCEEEEEEEEEECCCCCCCCCCCHH KKSAAQQTTELLDQTDIGREFLHHPSGKAPNYRYQLHFPEYRVYIAISDKPGKSPNVYVT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEE IKAETLWHVEFPTILELLEFDLDSFGGTIERIQPSRVDLCADFRINPPPTLQFIQQHRVS EEEEEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHH RSTMIRPYLSGETLETFYSGSPSSPVQIRIYDKGKEILKTNKQWFLPIWGVDTPEGVWRV HHHEECCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCCCEEEH EFQLRRTFLHQYRIKTIEDLWGKIGTIWEYLTAEWFSLRLPDNEKAERRTIHPWWLLVQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCCHHHHHHHH CSERFGGMSEVRRTYTTDTVEPIQKTLAHICGRLVSIAAQEGIKDRMKAILHLEELIYQR HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDEEKFRSEYKKKAIKLGYRGELGGAEYEG CCHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure STLPPYQIPTSMAESVTRHAQNPPISESLFLSCGIDTLDLGLYVSWDTRWNSTKAGLED CCCCCCCCCHHHHHHHHHHCCCCCCCHHHEEECCCCEEEEEEEEEECCCCCCCCCCCHH KKSAAQQTTELLDQTDIGREFLHHPSGKAPNYRYQLHFPEYRVYIAISDKPGKSPNVYVT HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEE IKAETLWHVEFPTILELLEFDLDSFGGTIERIQPSRVDLCADFRINPPPTLQFIQQHRVS EEEEEEEEECHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHH RSTMIRPYLSGETLETFYSGSPSSPVQIRIYDKGKEILKTNKQWFLPIWGVDTPEGVWRV HHHEECCCCCCCHHHHHHCCCCCCCEEEEEECCCHHHHHCCCCEEEEEECCCCCCCEEEH EFQLRRTFLHQYRIKTIEDLWGKIGTIWEYLTAEWFSLRLPDNEKAERRTIHPWWLLVQE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHCCCCHHHHHHHH CSERFGGMSEVRRTYTTDTVEPIQKTLAHICGRLVSIAAQEGIKDRMKAILHLEELIYQR HHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MDEEKFRSEYKKKAIKLGYRGELGGAEYEG CCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA