Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 197119267

GI number: 197119267

Start: 3339950

End: 3341200

Strand: Reverse

Name: rpfG [H]

Synonym: Gbem_2895

Alternate gene names: 197119267

Gene position: 3341200-3339950 (Counterclockwise)

Preceding gene: 197119268

Following gene: 308535324

Centisome position: 72.4

GC content: 59.87

Gene sequence:

>1251_bases
GTGTCACTAGAACTTTGCCACATGGCGCTCAGGCAGACACTTGATCTGGTCGCACTGACAGACGAGACGCTGCAGGGATT
GACGCGCCGCAAGTTCACCAGCGACGAACTCTACGGCGAAGTCCTCGGCAAGCTCCTCGGCGGCAACGGCGTGCGCGGTC
CTTCGGGCATCCTCATCGCCAGCGAGAGCGCAGACACCGCCTGCTGCAACGGCCGCGTCTTTCACTTGCGCCACGAGCGG
CTGGTGGAGCGTTCCGATGTCATTTGCATCGAAACCGGTTCAAGCTATGCCAGCAGTCTGGTTCTTCTGGAGGGAGGGGC
CGAGGTGGTGGCCATCAACTGGAAAGAGGTCTGCTCCAGCGTAGAGGAATTTCAGGCCTTCTTTCATCCCAAGGTGCTGG
CGGCGATGGCCGAGCCGATCCTGAACTTCGTGAGCTGCCGGATCAGCGGCAAGCCCGCCGGCGTCATCGAGGCCTTCAAC
TACCCAGGCCACGCCACCGAATACGACGCAGACGTGCTGCGGAGCGCGGCTGTGGTAATGGGGTCGCTTTTGGCGGTGTC
GAACGGGATGCGCGAGACCGAGCAGGCGTTCAATTACACCATCGAGGCCTTGGCCCGTGCCTGCGAGGCCGCGGAAGAGG
ATACCGGCAGACACATAGTCAGAGTCAACCGTTATTCGGGCGCCCTTGCCGCCAACATGGGATTCAACATAGAGTTCATA
CAGGACATCTCGATATCGGCGCAGATGCACGATGTCGGGAAGATCAGGATACCGTCGGAGATCCTGCTCAAGAAGGGGCT
GCTTACCGCCAAGGAGATGCAACTGATGCGGCAGCATCCTGCCTTTGGCTCCGAGATCATCGGGGATTCGCCGAGGCTCA
GGCTCGCGCACGAGATCGCCTTGGCCCACCACGAGAACTGGGACGGCACGGGGTATCCGAAACGACTGAGGGGGGAGAGG
ATTCCTTTAGGGGGGCGCATCGTGAAGGTGGCGGATGTCTACGACGCGCTGCGCTCAAAGAGAAGTTACAAGGGGGCGAT
GACCCATCAGGAAGCAGTGGCCGTATTCAGGGATGGGGATGAGAGGATCAATCCTGCCGCGCATTTCGACCCCGCGGTCC
TGGCAGCCTTCTTCAGGATAGAGCACATGTTCGACATGATCTACGACAGCTCAGTACCGAAGATCGGGCTGAACCATACC
AAAAAGAGCAAAACCAAAACCCTCGGCCGCGGAGACACGGAGAAAATCTGA

Upstream 100 bases:

>100_bases
CGATTTTCATCTTTCGTAGACGGTTTTCCGGGTTTGAAGTTTCCCCCCCGATCCGATATAACAATAAAGCCCTCATCCTC
AGACAGAACCAGGAGTAACC

Downstream 100 bases:

>100_bases
GGATACACGCTGCCCTTGCGTCCCCTCCCTCTTTGGGAAGATTCTTGGTCCCCCCTCCCCTTGCGGGAGGGGGGGCGTTA
TCCACGCAATTCCCCGGTGA

Product: cyclic diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSLELCHMALRQTLDLVALTDETLQGLTRRKFTSDELYGEVLGKLLGGNGVRGPSGILIASESADTACCNGRVFHLRHER
LVERSDVICIETGSSYASSLVLLEGGAEVVAINWKEVCSSVEEFQAFFHPKVLAAMAEPILNFVSCRISGKPAGVIEAFN
YPGHATEYDADVLRSAAVVMGSLLAVSNGMRETEQAFNYTIEALARACEAAEEDTGRHIVRVNRYSGALAANMGFNIEFI
QDISISAQMHDVGKIRIPSEILLKKGLLTAKEMQLMRQHPAFGSEIIGDSPRLRLAHEIALAHHENWDGTGYPKRLRGER
IPLGGRIVKVADVYDALRSKRSYKGAMTHQEAVAVFRDGDERINPAAHFDPAVLAAFFRIEHMFDMIYDSSVPKIGLNHT
KKSKTKTLGRGDTEKI

Sequences:

>Translated_416_residues
MSLELCHMALRQTLDLVALTDETLQGLTRRKFTSDELYGEVLGKLLGGNGVRGPSGILIASESADTACCNGRVFHLRHER
LVERSDVICIETGSSYASSLVLLEGGAEVVAINWKEVCSSVEEFQAFFHPKVLAAMAEPILNFVSCRISGKPAGVIEAFN
YPGHATEYDADVLRSAAVVMGSLLAVSNGMRETEQAFNYTIEALARACEAAEEDTGRHIVRVNRYSGALAANMGFNIEFI
QDISISAQMHDVGKIRIPSEILLKKGLLTAKEMQLMRQHPAFGSEIIGDSPRLRLAHEIALAHHENWDGTGYPKRLRGER
IPLGGRIVKVADVYDALRSKRSYKGAMTHQEAVAVFRDGDERINPAAHFDPAVLAAFFRIEHMFDMIYDSSVPKIGLNHT
KKSKTKTLGRGDTEKI
>Mature_415_residues
SLELCHMALRQTLDLVALTDETLQGLTRRKFTSDELYGEVLGKLLGGNGVRGPSGILIASESADTACCNGRVFHLRHERL
VERSDVICIETGSSYASSLVLLEGGAEVVAINWKEVCSSVEEFQAFFHPKVLAAMAEPILNFVSCRISGKPAGVIEAFNY
PGHATEYDADVLRSAAVVMGSLLAVSNGMRETEQAFNYTIEALARACEAAEEDTGRHIVRVNRYSGALAANMGFNIEFIQ
DISISAQMHDVGKIRIPSEILLKKGLLTAKEMQLMRQHPAFGSEIIGDSPRLRLAHEIALAHHENWDGTGYPKRLRGERI
PLGGRIVKVADVYDALRSKRSYKGAMTHQEAVAVFRDGDERINPAAHFDPAVLAAFFRIEHMFDMIYDSSVPKIGLNHTK
KSKTKTLGRGDTEKI

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 45727; Mature: 45596

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLELCHMALRQTLDLVALTDETLQGLTRRKFTSDELYGEVLGKLLGGNGVRGPSGILIA
CCHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEE
SESADTACCNGRVFHLRHERLVERSDVICIETGSSYASSLVLLEGGAEVVAINWKEVCSS
CCCCCCCCCCCCEEEEHHHHHHHHCCEEEEECCCCHHCEEEEEECCCCEEEEEHHHHHHH
VEEFQAFFHPKVLAAMAEPILNFVSCRISGKPAGVIEAFNYPGHATEYDADVLRSAAVVM
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
GSLLAVSNGMRETEQAFNYTIEALARACEAAEEDTGRHIVRVNRYSGALAANMGFNIEFI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEE
QDISISAQMHDVGKIRIPSEILLKKGLLTAKEMQLMRQHPAFGSEIIGDSPRLRLAHEIA
ECCCCEEEECCCCCEECCHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHH
LAHHENWDGTGYPKRLRGERIPLGGRIVKVADVYDALRSKRSYKGAMTHQEAVAVFRDGD
HHHCCCCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHEECCC
ERINPAAHFDPAVLAAFFRIEHMFDMIYDSSVPKIGLNHTKKSKTKTLGRGDTEKI
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLELCHMALRQTLDLVALTDETLQGLTRRKFTSDELYGEVLGKLLGGNGVRGPSGILIA
CHHHHHHHHHHHHHHHEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEE
SESADTACCNGRVFHLRHERLVERSDVICIETGSSYASSLVLLEGGAEVVAINWKEVCSS
CCCCCCCCCCCCEEEEHHHHHHHHCCEEEEECCCCHHCEEEEEECCCCEEEEEHHHHHHH
VEEFQAFFHPKVLAAMAEPILNFVSCRISGKPAGVIEAFNYPGHATEYDADVLRSAAVVM
HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
GSLLAVSNGMRETEQAFNYTIEALARACEAAEEDTGRHIVRVNRYSGALAANMGFNIEFI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCEEEE
QDISISAQMHDVGKIRIPSEILLKKGLLTAKEMQLMRQHPAFGSEIIGDSPRLRLAHEIA
ECCCCEEEECCCCCEECCHHHHHHHCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHHHHH
LAHHENWDGTGYPKRLRGERIPLGGRIVKVADVYDALRSKRSYKGAMTHQEAVAVFRDGD
HHHCCCCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHEECCC
ERINPAAHFDPAVLAAFFRIEHMFDMIYDSSVPKIGLNHTKKSKTKTLGRGDTEKI
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]