| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is atoS [C]
Identifier: 197119238
GI number: 197119238
Start: 3295116
End: 3297677
Strand: Direct
Name: atoS [C]
Synonym: Gbem_2865
Alternate gene names: 197119238
Gene position: 3295116-3297677 (Clockwise)
Preceding gene: 197119237
Following gene: 197119239
Centisome position: 71.4
GC content: 59.13
Gene sequence:
>2562_bases ATGGACAAAATGAATAGAGATACGCTGACGGTGGAACTGGAAAGGCTGCGGCAGGAAAACGAGGTCCTCTCCGGGCAGGT CAAGCGCCTGGTCAAAGCGGAAAGCAGGCTCTACGACTATCAGGAGAAACTGGATCTGCAGCTTAAGGAATACAGCGGGC TCTACGATCTCAATTCAAGGCTCTACACCTGCCGCGACCTCCCCGCGATCTTCGATCTCGCCACCGAGTACGTGATCAAC AGGCTCGACTACGAGCGGGTGCTCTTCTTCCAGAAAACCGAAAACAGCGGCGCCTATGCGGTCTGCGCCTGCGACGGCTA CCACTACCCTCAGGAAAAAGAGGGCGTTTCCTCCCTCACCCTCTCCCGCCAGGCAGCCATCCTGACCCCGCTTTTCGCCG GGGCCAACTACAGCATCTGCACGACAGATTCGCAGTCGCCCGATCTTGTCGAACACCGGGACCTGCTGCTGATGCACGAG TATTTCATCTGCCCCTTGGGAAACCGAACCGACCCCGTAGCATTTCTTGCCGTGGGAAACTCCGCCGAAAACGCGGAATT CTACCGCAGGATCAGCGACAGCGAGGAGGCCCTTTTCGGCCTCGGCAACCTGGTCGGGCTCCTCTCCTCCACCATCGAAA ACCAGATCCTCTACACCGGGATGAAGAAAGCACTTGAGCAGGAGCGCCTTGCCGAGGCGAAGTACCGGGGCATCTTCGAA AACGCGATGGAAGGGATCTTCCAAACCACCCCCGACGGGAAATTCCTTTCCTGCAACCCGGCGACGGCCGCCATACTGGG CTACAGCACCCCCGAGGAAGTGCTGGAAGGGGTGGTCAACGTAGGGCTGCAACTCTACGTGGACCCGCAGCGGCGCGACG AACTCTACGCCATGATGTTCCAGCGGCAAAATGTGAAGAATTTCGAGGTCGAATTCTGCCGCAAGGACGGAAGCCGGATC TGGGTCGATCTCAGTACCCGTCCAGCCTTCAACGAAGAGGGAGAACTGATCTATATCGACGGGGTGATACAGGACATCAC CGAGCGAAAGCACAACGAAGAGGCTCTGCGCAAGCTGTCCCAGGTGGTCGAGCAGAGTCCGGTTTCCATCGTCATCACCG ACACCCAGGGGCGCATCGAATTCGTCAATCCGAAGTTCGTCCAGTTGACCGGCTACTCCCCCGGGGAAGTGCTCGGCCAA AACCCGAGCATCCTCAACTCCGGAAAGGCGCCGATCGATAAATCGCGGAAACTATGGGAGACGATTCGGGCCGGCAAGGT CTGGGAAGGGGAGTTCCTGAACCGGAAGAAGGATGGCGAACTCTTCTCCGAGCACGCAACCATCTCCCCCATCCGGAACA AGGACGGCGTCATCACCCATTTCCTGGCCATCAAGGAGGACATCACCGAAAGGAAGCTTTTGCAAGCCCAGCTTTTCCAG TCACAGAAGATGGAGTCGATCGGAAGGCTCGCCGGCGGAGTGGCGCACGACTTCAACAACATGCTGAGCGTCATCCTGGG GAGCGCGCAGTTGGCGATGCGCTGCGTTACCGAGGGGACCCCGGTCTGGCAGGACCTGGAACAGATAGTACAGGCCGGGA AGCGCTCCAGCCAGATCACCCGCCAGCTTCTCGCCTTCTCCCGAAAGGAGATCATCGCGCCGCGCGAGGTGAACCTGAAC GAGCACTTCACGGAGATGCAGAAGACGCTGGGGCGCCTGATCGGCGAGGACATCCGCATGAATTTCAATCCGGAGCCCGG CCTTTGGACCATCGATGCGGATACGACGCAACTGGACCAGATCCTGGTCAACCTGGCGGTGAACGCACGCGACGCAATGG GCAACGGGGGGGTACTCACCATAGAAACGGCAAACGTCCGGGTGGATGGCAGCTACAGCCAATTTCACCTGGATGCCTCC CTTGGGGAATACGTGCAACTTGCGGTCAGCGACAACGGCTGCGGCATGGACCGCGAGACCCTGGCGCAGATTTTCGAGCC CTTTTTCACCACGAAAGAGGTGGGCAAGGGGACCGGGCTCGGGCTCGCCACCGTCTACGGCATCGTAAGGCAGCACAACG GCTTCATTAACGTCTACAGCGAACCGGGTGAGGGAACCACCTTCCAGATAAACTTCCCCAGGTGTTCCGGAGCCGCGGTC GATGCGGCAAAAGACGAAGAGGTTTCGCTCAGCGGTTCGGGAACGGTGCTATTGGTCGAGGACGACCCGCTGGTGCGCAG AACAACACTCAACACACTCAAGGAGATCGGCTACCACGTCATCGAGGCGGCCGGCGCCGATGAGGCTATCGCCCTTTGCC GCAAGGAAGATGCCGAGCTCGACGTCATTCTCACCGACGTGGTGATGCCTGGCATGAACGGCAAGGAGATGGTCGATGCC ATCGAGTCGTTTCGCCCGGGGCTCAAGGTGCTATTCATGTCCGGCTACACAAAAGACCTGGTGGCGCAACGTGGCGTGGT GGAAGGGGGGAGACACTTCATCCAGAAGCCTTTCGATATCCAATCCCTGGCCAGAAAGCTGCGTGAAACGATGCAGCGCT GA
Upstream 100 bases:
>100_bases TTATACCTATGGGGAAATAGGTCCGATCAGCAGGTACAACTGCTTCCACAACTTCACCTCAGTCGTAGCGGTAGTCTACT AAGGTCGGGCGGTCGGGTAC
Downstream 100 bases:
>100_bases GTACTCATTTGAGTGACACATGTAATCAACACCACCAGACCGCCCCTCCGCAGTTCCGACGCCACTCGCAACAGTCGCCA CCGTAAAATAGCCAGTTAGC
Product: PAS/PAS domain-containing sensor histidine kinase response regulator
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MDKMNRDTLTVELERLRQENEVLSGQVKRLVKAESRLYDYQEKLDLQLKEYSGLYDLNSRLYTCRDLPAIFDLATEYVIN RLDYERVLFFQKTENSGAYAVCACDGYHYPQEKEGVSSLTLSRQAAILTPLFAGANYSICTTDSQSPDLVEHRDLLLMHE YFICPLGNRTDPVAFLAVGNSAENAEFYRRISDSEEALFGLGNLVGLLSSTIENQILYTGMKKALEQERLAEAKYRGIFE NAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMFQRQNVKNFEVEFCRKDGSRI WVDLSTRPAFNEEGELIYIDGVIQDITERKHNEEALRKLSQVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQ NPSILNSGKAPIDKSRKLWETIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLFQ SQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQAGKRSSQITRQLLAFSRKEIIAPREVNLN EHFTEMQKTLGRLIGEDIRMNFNPEPGLWTIDADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDAS LGEYVQLAVSDNGCGMDRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFPRCSGAAV DAAKDEEVSLSGSGTVLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAELDVILTDVVMPGMNGKEMVDA IESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDIQSLARKLRETMQR
Sequences:
>Translated_853_residues MDKMNRDTLTVELERLRQENEVLSGQVKRLVKAESRLYDYQEKLDLQLKEYSGLYDLNSRLYTCRDLPAIFDLATEYVIN RLDYERVLFFQKTENSGAYAVCACDGYHYPQEKEGVSSLTLSRQAAILTPLFAGANYSICTTDSQSPDLVEHRDLLLMHE YFICPLGNRTDPVAFLAVGNSAENAEFYRRISDSEEALFGLGNLVGLLSSTIENQILYTGMKKALEQERLAEAKYRGIFE NAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMFQRQNVKNFEVEFCRKDGSRI WVDLSTRPAFNEEGELIYIDGVIQDITERKHNEEALRKLSQVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQ NPSILNSGKAPIDKSRKLWETIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLFQ SQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQAGKRSSQITRQLLAFSRKEIIAPREVNLN EHFTEMQKTLGRLIGEDIRMNFNPEPGLWTIDADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDAS LGEYVQLAVSDNGCGMDRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFPRCSGAAV DAAKDEEVSLSGSGTVLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAELDVILTDVVMPGMNGKEMVDA IESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDIQSLARKLRETMQR >Mature_853_residues MDKMNRDTLTVELERLRQENEVLSGQVKRLVKAESRLYDYQEKLDLQLKEYSGLYDLNSRLYTCRDLPAIFDLATEYVIN RLDYERVLFFQKTENSGAYAVCACDGYHYPQEKEGVSSLTLSRQAAILTPLFAGANYSICTTDSQSPDLVEHRDLLLMHE YFICPLGNRTDPVAFLAVGNSAENAEFYRRISDSEEALFGLGNLVGLLSSTIENQILYTGMKKALEQERLAEAKYRGIFE NAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMFQRQNVKNFEVEFCRKDGSRI WVDLSTRPAFNEEGELIYIDGVIQDITERKHNEEALRKLSQVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQ NPSILNSGKAPIDKSRKLWETIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLFQ SQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQAGKRSSQITRQLLAFSRKEIIAPREVNLN EHFTEMQKTLGRLIGEDIRMNFNPEPGLWTIDADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDAS LGEYVQLAVSDNGCGMDRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFPRCSGAAV DAAKDEEVSLSGSGTVLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAELDVILTDVVMPGMNGKEMVDA IESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDIQSLARKLRETMQR
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=389, Percent_Identity=30.5912596401028, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1790436, Length=261, Percent_Identity=32.183908045977, Blast_Score=124, Evalue=2e-29, Organism=Escherichia coli, GI87081816, Length=374, Percent_Identity=25.1336898395722, Blast_Score=90, Evalue=5e-19, Organism=Escherichia coli, GI1788713, Length=273, Percent_Identity=25.6410256410256, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1790300, Length=352, Percent_Identity=26.4204545454545, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI48994928, Length=371, Percent_Identity=26.4150943396226, Blast_Score=83, Evalue=9e-17, Organism=Escherichia coli, GI1786912, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI145693157, Length=367, Percent_Identity=26.158038147139, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1790346, Length=241, Percent_Identity=26.5560165975104, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 95398; Mature: 95398
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKMNRDTLTVELERLRQENEVLSGQVKRLVKAESRLYDYQEKLDLQLKEYSGLYDLNSR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCC LYTCRDLPAIFDLATEYVINRLDYERVLFFQKTENSGAYAVCACDGYHYPQEKEGVSSLT EEEHHCCHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCEEEEEECCCCCCCHHCCCHHHH LSRQAAILTPLFAGANYSICTTDSQSPDLVEHRDLLLMHEYFICPLGNRTDPVAFLAVGN HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHEEEHHHEECCCCCCCCEEEEEECC SAENAEFYRRISDSEEALFGLGNLVGLLSSTIENQILYTGMKKALEQERLAEAKYRGIFE CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMF HHHHHHEECCCCCCEEECCCCCEEEECCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHH QRQNVKNFEVEFCRKDGSRIWVDLSTRPAFNEEGELIYIDGVIQDITERKHNEEALRKLS HHCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHH QVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQNPSILNSGKAPIDKSRKLWE HHHHCCCCEEEEECCCCEEEECCCEEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHH TIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLFQ HHHCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQAGKRSSQIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH RQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPEPGLWTIDADTTQLDQ HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCEEEEECCHHHHHH ILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDASLGEYVQLAVSDNGCGMDRET HHHHHHHCCHHCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCCCHHH LAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFPRCSGAAV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCCC DAAKDEEVSLSGSGTVLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAEL CCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCE DVILTDVVMPGMNGKEMVDAIESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDI EEEEEHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHCCHHHHCCCCCH QSLARKLRETMQR HHHHHHHHHHHCC >Mature Secondary Structure MDKMNRDTLTVELERLRQENEVLSGQVKRLVKAESRLYDYQEKLDLQLKEYSGLYDLNSR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECCCC LYTCRDLPAIFDLATEYVINRLDYERVLFFQKTENSGAYAVCACDGYHYPQEKEGVSSLT EEEHHCCHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCEEEEEECCCCCCCHHCCCHHHH LSRQAAILTPLFAGANYSICTTDSQSPDLVEHRDLLLMHEYFICPLGNRTDPVAFLAVGN HHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHEEEHHHEECCCCCCCCEEEEEECC SAENAEFYRRISDSEEALFGLGNLVGLLSSTIENQILYTGMKKALEQERLAEAKYRGIFE CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMF HHHHHHEECCCCCCEEECCCCCEEEECCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHH QRQNVKNFEVEFCRKDGSRIWVDLSTRPAFNEEGELIYIDGVIQDITERKHNEEALRKLS HHCCCCCCCHHHEECCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHH QVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQNPSILNSGKAPIDKSRKLWE HHHHCCCCEEEEECCCCEEEECCCEEEEEECCCCHHHCCCCCCCCCCCCCCCHHHHHHHH TIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLFQ HHHCCCCCCCHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH SQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQAGKRSSQIT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHH RQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPEPGLWTIDADTTQLDQ HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCEEEEECCHHHHHH ILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDASLGEYVQLAVSDNGCGMDRET HHHHHHHCCHHCCCCCCEEEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCCCHHH LAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFPRCSGAAV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCCCCCCCC DAAKDEEVSLSGSGTVLLVEDDPLVRRTTLNTLKEIGYHVIEAAGADEAIALCRKEDAEL CCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCE DVILTDVVMPGMNGKEMVDAIESFRPGLKVLFMSGYTKDLVAQRGVVEGGRHFIQKPFDI EEEEEHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCHHHCCHHHHCCCCCH QSLARKLRETMQR HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA