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The map label for this gene is ydiF [H]

Identifier: 197119077

GI number: 197119077

Start: 3121573

End: 3123195

Strand: Reverse

Name: ydiF [H]

Synonym: Gbem_2704

Alternate gene names: 197119077

Gene position: 3123195-3121573 (Counterclockwise)

Preceding gene: 197119079

Following gene: 197119076

Centisome position: 67.67

GC content: 63.46

Gene sequence:

>1623_bases
ATGATCCATCTGTCCAACATCACCAAGCAGCACGGCTCGCAGGTACTCTTCCGCGAGGCGAGCTTCCAGATACTCCCAGG
CACCCGGACCGGCCTTGTCGGCCCCAACGGCGCAGGGAAGACCACGCTCTTTCGCATCGTCACCGGCGAAGAGGAGGTGG
ACGCCGGCGAGATGACGCTGGCCAAGAAGACCACCATCGGCTACTTCTCGCAGGACATAGGCGACATGCGCGGGAGATCC
GCGCTGCAGGAGGTGATGGCGGTTTCTGCCGAGACGGTGCGCCTTGCCGCCGAACTGAAGCAGATGGAAGAGCAGATGGG
GCTCCCCATGTCCGACGACGACATGGCGTCGCTTTTGGAGCGCTACGGCTCCGCGATGGAGGAGTTCGAGCACCGGGGAG
GGTACGATCTCGATTCGCGCGCCCAGGAGGTGCTGACCGGCCTGGGTATCGGGCCGGACCGCTTCCATAACCCGGTCGAA
TCGTTCTCCGGCGGTTGGCGCATGCGCGTGGCGCTTGCCGGCATCCTCACGCTGCAGCCCGACGTATTGCTTCTGGACGA
GCCGACCAACCACCTGGACGTCGAATCGATCATCTGGCTCGAAGAGTGGCTTGCCAATGAATTCACCGGGGCGCTGCTGA
TGACCAGCCACGACCGCGATTTCATGAACCGCGTGGTGACCCGCGTCATCGAGGTGGCCAACAAGACGGTAACCACCTAC
GGCGGCAACTACGACTTCTACGAAAAGGAGCGCGACATCCGCCGCGAGCAGCTGATCGCGAGCCACAAGCGCCAGCAGGA
GATGCTCGCCAAGGAGGAGGAATTCATCGCCCGTTTCGCTGCCCGCGCCTCCCACGCGGCCCAGGTGCAGTCCCGGGTGA
AGAAGATCGAGAAGATCGAGCGCATCGAGATTCCGCCCGAGGAGCGGGTGGTCCGCTTCGAGTTCGCCGCACCCCCCAGA
AGCGGCGACGACGTGGTGGTCATGGATGGGCTGGGAAAGAGCTGGGAACAGCCGGACGGGAGCCTGCAGCCGATCTTCTC
CGGCGTCACCGGGGTCGTCAAAAGGCTCAGCAAGATCGCGGTGGTCGGCGTGAACGGCGCGGGGAAATCCACCTTCCTTA
AGGTGCTCGCCGGCGAGACCGATCCGAGCCAGGGGAGCGTGGCGCTCGGGGCGAACGTGGAGCTTGGCTACTTCAGCCAG
CACGCCATGGAGATCCTCGATCCCAAGAAGACCATCTTCGAAACGGTGCAGGACGTGATACCGCTTGCGACCATCGGCGT
GATCCGCAACCTGCTAGGCTCCTTCCTGTTCCAGGGGGACGACGTGGACAAGAGGATCGAGAACCTCTCCGGCGGCGAGA
AGAGCCGAGTGGTGTTGGCCACGCTCCTGGCCCGGCCGGTCAACTTCCTGGTCCTGGACGAGCCGACCAACCACCTCGAC
ATACGGTCGCGCGAGATACTACTGAACGCCCTGGACAACTTCGCCGGGACCGTCATCCTCGTCAGCCACGACCGCCACTT
CCTGCGTCTTTTGGTGGACCGCGTCATCGAGGTGGACCACGGCGAGATGAGGCTCTACGAGGGGGATTACGACTACTACC
TCTCCAAAACGCATCATGCCTGA

Upstream 100 bases:

>100_bases
CGTTACCCGCCCCAATCGCTCCCTTGATAAAAATTAAGTTGTCACTGGCACACTCTTCATGCTAACGCTGGCCAGTTAAG
ATCAAACTCCAGGAGCATTC

Downstream 100 bases:

>100_bases
AATTTAGAGAGCCAAGATTAAGCTCGGGTTAGATTCTTGTTTGCCTGGGCCGCCGCTCCATGCTATAAAGCGCATGCAGT
TTTACAATGCCCATTGAAAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MIHLSNITKQHGSQVLFREASFQILPGTRTGLVGPNGAGKTTLFRIVTGEEEVDAGEMTLAKKTTIGYFSQDIGDMRGRS
ALQEVMAVSAETVRLAAELKQMEEQMGLPMSDDDMASLLERYGSAMEEFEHRGGYDLDSRAQEVLTGLGIGPDRFHNPVE
SFSGGWRMRVALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLANEFTGALLMTSHDRDFMNRVVTRVIEVANKTVTTY
GGNYDFYEKERDIRREQLIASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERVVRFEFAAPPR
SGDDVVVMDGLGKSWEQPDGSLQPIFSGVTGVVKRLSKIAVVGVNGAGKSTFLKVLAGETDPSQGSVALGANVELGYFSQ
HAMEILDPKKTIFETVQDVIPLATIGVIRNLLGSFLFQGDDVDKRIENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLNALDNFAGTVILVSHDRHFLRLLVDRVIEVDHGEMRLYEGDYDYYLSKTHHA

Sequences:

>Translated_540_residues
MIHLSNITKQHGSQVLFREASFQILPGTRTGLVGPNGAGKTTLFRIVTGEEEVDAGEMTLAKKTTIGYFSQDIGDMRGRS
ALQEVMAVSAETVRLAAELKQMEEQMGLPMSDDDMASLLERYGSAMEEFEHRGGYDLDSRAQEVLTGLGIGPDRFHNPVE
SFSGGWRMRVALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLANEFTGALLMTSHDRDFMNRVVTRVIEVANKTVTTY
GGNYDFYEKERDIRREQLIASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERVVRFEFAAPPR
SGDDVVVMDGLGKSWEQPDGSLQPIFSGVTGVVKRLSKIAVVGVNGAGKSTFLKVLAGETDPSQGSVALGANVELGYFSQ
HAMEILDPKKTIFETVQDVIPLATIGVIRNLLGSFLFQGDDVDKRIENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLNALDNFAGTVILVSHDRHFLRLLVDRVIEVDHGEMRLYEGDYDYYLSKTHHA
>Mature_540_residues
MIHLSNITKQHGSQVLFREASFQILPGTRTGLVGPNGAGKTTLFRIVTGEEEVDAGEMTLAKKTTIGYFSQDIGDMRGRS
ALQEVMAVSAETVRLAAELKQMEEQMGLPMSDDDMASLLERYGSAMEEFEHRGGYDLDSRAQEVLTGLGIGPDRFHNPVE
SFSGGWRMRVALAGILTLQPDVLLLDEPTNHLDVESIIWLEEWLANEFTGALLMTSHDRDFMNRVVTRVIEVANKTVTTY
GGNYDFYEKERDIRREQLIASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERVVRFEFAAPPR
SGDDVVVMDGLGKSWEQPDGSLQPIFSGVTGVVKRLSKIAVVGVNGAGKSTFLKVLAGETDPSQGSVALGANVELGYFSQ
HAMEILDPKKTIFETVQDVIPLATIGVIRNLLGSFLFQGDDVDKRIENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
IRSREILLNALDNFAGTVILVSHDRHFLRLLVDRVIEVDHGEMRLYEGDYDYYLSKTHHA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=539, Percent_Identity=34.3228200371057, Blast_Score=276, Evalue=4e-74,
Organism=Homo sapiens, GI10947137, Length=540, Percent_Identity=32.037037037037, Blast_Score=245, Evalue=7e-65,
Organism=Homo sapiens, GI27881506, Length=540, Percent_Identity=32.037037037037, Blast_Score=244, Evalue=1e-64,
Organism=Homo sapiens, GI10947135, Length=538, Percent_Identity=31.2267657992565, Blast_Score=221, Evalue=9e-58,
Organism=Homo sapiens, GI69354671, Length=538, Percent_Identity=31.2267657992565, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI108773784, Length=173, Percent_Identity=30.635838150289, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI108773782, Length=173, Percent_Identity=30.635838150289, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1789751, Length=533, Percent_Identity=36.0225140712946, Blast_Score=339, Evalue=3e-94,
Organism=Escherichia coli, GI1787041, Length=543, Percent_Identity=34.9907918968692, Blast_Score=309, Evalue=3e-85,
Organism=Escherichia coli, GI1787182, Length=506, Percent_Identity=35.3754940711462, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI2367384, Length=524, Percent_Identity=30.9160305343511, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1788225, Length=264, Percent_Identity=23.8636363636364, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI1787758, Length=206, Percent_Identity=25.7281553398058, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=254, Percent_Identity=27.1653543307087, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=226, Percent_Identity=31.858407079646, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081791, Length=180, Percent_Identity=28.8888888888889, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786398, Length=243, Percent_Identity=26.7489711934156, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=540, Percent_Identity=32.962962962963, Blast_Score=251, Evalue=5e-67,
Organism=Caenorhabditis elegans, GI17555318, Length=524, Percent_Identity=31.6793893129771, Blast_Score=237, Evalue=9e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=554, Percent_Identity=31.7689530685921, Blast_Score=233, Evalue=2e-61,
Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=31.6666666666667, Blast_Score=259, Evalue=8e-70,
Organism=Saccharomyces cerevisiae, GI6320874, Length=541, Percent_Identity=32.1626617375231, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6325030, Length=405, Percent_Identity=27.6543209876543, Blast_Score=138, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=394, Percent_Identity=26.6497461928934, Blast_Score=126, Evalue=9e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=393, Percent_Identity=24.9363867684478, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI24666836, Length=533, Percent_Identity=34.3339587242026, Blast_Score=293, Evalue=2e-79,
Organism=Drosophila melanogaster, GI24641342, Length=519, Percent_Identity=31.7919075144509, Blast_Score=250, Evalue=2e-66,
Organism=Drosophila melanogaster, GI24642252, Length=541, Percent_Identity=29.0203327171904, Blast_Score=239, Evalue=5e-63,
Organism=Drosophila melanogaster, GI18859989, Length=541, Percent_Identity=29.0203327171904, Blast_Score=239, Evalue=5e-63,
Organism=Drosophila melanogaster, GI281363262, Length=242, Percent_Identity=29.7520661157025, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24653245, Length=242, Percent_Identity=29.7520661157025, Blast_Score=76, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60166; Mature: 60166

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLSNITKQHGSQVLFREASFQILPGTRTGLVGPNGAGKTTLFRIVTGEEEVDAGEMTL
CEECCHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
AKKTTIGYFSQDIGDMRGRSALQEVMAVSAETVRLAAELKQMEEQMGLPMSDDDMASLLE
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGSAMEEFEHRGGYDLDSRAQEVLTGLGIGPDRFHNPVESFSGGWRMRVALAGILTLQP
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCEEEHHHHHHHEECC
DVLLLDEPTNHLDVESIIWLEEWLANEFTGALLMTSHDRDFMNRVVTRVIEVANKTVTTY
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYEKERDIRREQLIASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPPEERVVRFEFAAPPRSGDDVVVMDGLGKSWEQPDGSLQPIFSGVTGVVKRLSKIA
HCCCCCHHCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEE
VVGVNGAGKSTFLKVLAGETDPSQGSVALGANVELGYFSQHAMEILDPKKTIFETVQDVI
EEEECCCCHHHHHHHHCCCCCCCCCCEEECCCEEECHHHHHHHHHHCCHHHHHHHHHHHH
PLATIGVIRNLLGSFLFQGDDVDKRIENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLNALDNFAGTVILVSHDRHFLRLLVDRVIEVDHGEMRLYEGDYDYYLSKTHHA
CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCC
>Mature Secondary Structure
MIHLSNITKQHGSQVLFREASFQILPGTRTGLVGPNGAGKTTLFRIVTGEEEVDAGEMTL
CEECCHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEE
AKKTTIGYFSQDIGDMRGRSALQEVMAVSAETVRLAAELKQMEEQMGLPMSDDDMASLLE
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGSAMEEFEHRGGYDLDSRAQEVLTGLGIGPDRFHNPVESFSGGWRMRVALAGILTLQP
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCHHHHCCCCEEEHHHHHHHEECC
DVLLLDEPTNHLDVESIIWLEEWLANEFTGALLMTSHDRDFMNRVVTRVIEVANKTVTTY
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYEKERDIRREQLIASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPPEERVVRFEFAAPPRSGDDVVVMDGLGKSWEQPDGSLQPIFSGVTGVVKRLSKIA
HCCCCCHHCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEE
VVGVNGAGKSTFLKVLAGETDPSQGSVALGANVELGYFSQHAMEILDPKKTIFETVQDVI
EEEECCCCHHHHHHHHCCCCCCCCCCEEECCCEEECHHHHHHHHHHCCHHHHHHHHHHHH
PLATIGVIRNLLGSFLFQGDDVDKRIENLSGGEKSRVVLATLLARPVNFLVLDEPTNHLD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLNALDNFAGTVILVSHDRHFLRLLVDRVIEVDHGEMRLYEGDYDYYLSKTHHA
CHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]