| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is slt [H]
Identifier: 197118979
GI number: 197118979
Start: 3015316
End: 3017445
Strand: Direct
Name: slt [H]
Synonym: Gbem_2602
Alternate gene names: 197118979
Gene position: 3015316-3017445 (Clockwise)
Preceding gene: 197118936
Following gene: 197118980
Centisome position: 65.34
GC content: 62.68
Gene sequence:
>2130_bases ATGTTTAACCGCACCGCCATTGCCGCAGCCGCCGTACTTTTCTGCACCGCCCTTCCCGCCTCAGCACTGACCTTCAAGCC CGCCGACGAAGCACTGGCAAGCGCCGCCTCCCGCATGCAGGCCAAGGATTACCGTACTGCCAAAGAAGCTGCGTCGAAAG TAAACGACAAAGGCGTCCGCAGCTTCATGGTCGGCATGGCGGCGGCCCGGCTGGAGCAGTGGGAAGAGGCGGCAGCACAG CTTCCCGCCGCGGCGGAGGGGTACCCGATCCTCGCCGATTACGCGCTCTACTACCAGGGGCTCTCCTTGGCCAAGTTGGA GCGGCACGATCAGGCTCTGACTCCCTTGTACCGGCTCCTCAAACATTACCCGGAAAGCCGCCTGGTGCGCGCAGCGCTCA TCCTGTACGCCGACACCCTCGCGGCGGCGGGCCATTACAACGAGGCTCAACAAAGTTACGCCACCTTCGTCGAGCGCTAC CCGTCCGGCAGCGACTCCATCTCCGCGCTCTACGGCTCCGCCCTTTGCAAGGAGAAGCTTGGCGACCCGATTGCGGCGGC GAAAGTCCTGCGCGGCATCTATCTCAACTACCCCGCCTCCTCCTTTTCCGACAAGTCCGCCCGCGACCTGCAAAGGTTAA CCGGCGCCGGGACCAAGGTCGATCCGTACACCAGCGCCGAACTCTTCAAGCGCTGCGGCACGCTGTACGGACTGGGACGC TATCTGCAGGCGGCAGAGGCCTACGCGGAGATACCGCTTTCCGGGGAGAGCGCCGATTTCGTCGCCAAGCTCAAGCTGAA GAAGGGACAGGCGCTCTATAAGGCAAGGCACTACCAGCAGGCGCAGGCGACCTTCTCCAACATCTCCGGCGCCCGCCACG AATCAGATCTCTGGCTGGCGCGGACCCTGGACAAGACCGGGGAGCAGGACCAAGCCTTCAAACTGTACATGCAGCTGGCG CAGGACCGGGACAGCGGGAATGCCGGCCAGGAGGCGCTCCTGGAGGCGGCATACCTGAAAAGGTTCCAGCGCAAGTGGAG CGAGGCGCTGCCGCTTTTCAAGCAATACCTGACAGCCGTCCAGCAGAAACCTTCCAACGTGCTCTGGGAGTCCGCCTGGG CCAGCTACCAGTCCCGCAATTACGAAGATGCCGCCGCGCAGTTCAAAAAGCTCACCGAGCGCGAAGACCTGCGGGACAAG TCGCTCTACTGGCTGGGCAAGACCCTCGCCGCCACCGGCGACGCCAAAGGTGCGCAGCAGGCGTTATCGACCCTGGCAGC GGAATTCCCGCTCGGGTACTACGCCCTGATCAGCAACAACCACGCGGGGGAAGAGCTTCCGCTCCCCCCAAAGAGCATCA CCGAGGCGCTCCCCATGCCTTCTGGTTTCGAGCGGGAAAAGGCGCTGATCTCGCTCGGATTTTACGATGAGGCGGTCAGG GAACTCTCGATCGGCAAGAAGAACAGGAGTGCTGCGGGGATCGCCCGGCTCTACCTGGAGATGGAGAACTTCAACGGCGC CTTCCACGCCATGTCCAATGAGAAGCCAAAGCGCGGCGACAAGGACAACGCCACCATCTGGGGGGTCGCCTACCCGCTCG CGTACAAAGAGGACGTGGCGCGCCACGCAGCCGCCAACGCCATACCGGAAAGCCTCGTCTACGCCGTCATGCGCCAGGAG AGCAACTACTTCCCGGCGGCTCTCTCGCCCGTCGGCGCCGTAGGTCTCATGCAGATCATGCCCGCCACAGCCGAAGCGAT GTCGAAAGGGGATTCGAAGCGCCTGACCACCCCGGAGCTGAACATAAGGCTCGGGACCAGGCACCTTAAAGACCTGCTGG ATAGCTACGACCGCAACTTAACCCTCGCTATCGCCGCCTACAACGCAGGGTCCGGCAACGTGAAACGGTGGCAGAAAGGG TACGGGCATCTGCCCCAGGACGAATTCGTGGAGAGCATCCCCTTCAAGGAGACGCGCGAGTACGTGAAGAAAGTGGTGAC GGGCATGGAGATGTACCAGCGTTTGTACCGCCTTCCCCCTTACCAGCAGCCGAACCTGCAGAAGAAGGTGAACCCTGCAA GTGGGCATCCCGGCGAGCAGAAAGTAGCGCAGGCGATTTCGGGACATTAG
Upstream 100 bases:
>100_bases ATCATCGCCGGCTTTCCCCTTACAATTGGCCATTGCCTTTTCGGCTTCGCTCCGGTAAGAATACGGGTCGAGCTTTTTTG CCGAACCCAAGGGAGAAATA
Downstream 100 bases:
>100_bases GAGAGGCCGCTTTCTGGTTCCCAAGCTGCAATTCGGGAGTCTCTGCTGCGCAGCCGCTACTTTCCACCCATCAGGAGCAG TCACACCCATGCAGATAGTT
Product: lytic transglycosylase domain-containing protein
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 709; Mature: 709
Protein sequence:
>709_residues MFNRTAIAAAAVLFCTALPASALTFKPADEALASAASRMQAKDYRTAKEAASKVNDKGVRSFMVGMAAARLEQWEEAAAQ LPAAAEGYPILADYALYYQGLSLAKLERHDQALTPLYRLLKHYPESRLVRAALILYADTLAAAGHYNEAQQSYATFVERY PSGSDSISALYGSALCKEKLGDPIAAAKVLRGIYLNYPASSFSDKSARDLQRLTGAGTKVDPYTSAELFKRCGTLYGLGR YLQAAEAYAEIPLSGESADFVAKLKLKKGQALYKARHYQQAQATFSNISGARHESDLWLARTLDKTGEQDQAFKLYMQLA QDRDSGNAGQEALLEAAYLKRFQRKWSEALPLFKQYLTAVQQKPSNVLWESAWASYQSRNYEDAAAQFKKLTEREDLRDK SLYWLGKTLAATGDAKGAQQALSTLAAEFPLGYYALISNNHAGEELPLPPKSITEALPMPSGFEREKALISLGFYDEAVR ELSIGKKNRSAAGIARLYLEMENFNGAFHAMSNEKPKRGDKDNATIWGVAYPLAYKEDVARHAAANAIPESLVYAVMRQE SNYFPAALSPVGAVGLMQIMPATAEAMSKGDSKRLTTPELNIRLGTRHLKDLLDSYDRNLTLAIAAYNAGSGNVKRWQKG YGHLPQDEFVESIPFKETREYVKKVVTGMEMYQRLYRLPPYQQPNLQKKVNPASGHPGEQKVAQAISGH
Sequences:
>Translated_709_residues MFNRTAIAAAAVLFCTALPASALTFKPADEALASAASRMQAKDYRTAKEAASKVNDKGVRSFMVGMAAARLEQWEEAAAQ LPAAAEGYPILADYALYYQGLSLAKLERHDQALTPLYRLLKHYPESRLVRAALILYADTLAAAGHYNEAQQSYATFVERY PSGSDSISALYGSALCKEKLGDPIAAAKVLRGIYLNYPASSFSDKSARDLQRLTGAGTKVDPYTSAELFKRCGTLYGLGR YLQAAEAYAEIPLSGESADFVAKLKLKKGQALYKARHYQQAQATFSNISGARHESDLWLARTLDKTGEQDQAFKLYMQLA QDRDSGNAGQEALLEAAYLKRFQRKWSEALPLFKQYLTAVQQKPSNVLWESAWASYQSRNYEDAAAQFKKLTEREDLRDK SLYWLGKTLAATGDAKGAQQALSTLAAEFPLGYYALISNNHAGEELPLPPKSITEALPMPSGFEREKALISLGFYDEAVR ELSIGKKNRSAAGIARLYLEMENFNGAFHAMSNEKPKRGDKDNATIWGVAYPLAYKEDVARHAAANAIPESLVYAVMRQE SNYFPAALSPVGAVGLMQIMPATAEAMSKGDSKRLTTPELNIRLGTRHLKDLLDSYDRNLTLAIAAYNAGSGNVKRWQKG YGHLPQDEFVESIPFKETREYVKKVVTGMEMYQRLYRLPPYQQPNLQKKVNPASGHPGEQKVAQAISGH >Mature_709_residues MFNRTAIAAAAVLFCTALPASALTFKPADEALASAASRMQAKDYRTAKEAASKVNDKGVRSFMVGMAAARLEQWEEAAAQ LPAAAEGYPILADYALYYQGLSLAKLERHDQALTPLYRLLKHYPESRLVRAALILYADTLAAAGHYNEAQQSYATFVERY PSGSDSISALYGSALCKEKLGDPIAAAKVLRGIYLNYPASSFSDKSARDLQRLTGAGTKVDPYTSAELFKRCGTLYGLGR YLQAAEAYAEIPLSGESADFVAKLKLKKGQALYKARHYQQAQATFSNISGARHESDLWLARTLDKTGEQDQAFKLYMQLA QDRDSGNAGQEALLEAAYLKRFQRKWSEALPLFKQYLTAVQQKPSNVLWESAWASYQSRNYEDAAAQFKKLTEREDLRDK SLYWLGKTLAATGDAKGAQQALSTLAAEFPLGYYALISNNHAGEELPLPPKSITEALPMPSGFEREKALISLGFYDEAVR ELSIGKKNRSAAGIARLYLEMENFNGAFHAMSNEKPKRGDKDNATIWGVAYPLAYKEDVARHAAANAIPESLVYAVMRQE SNYFPAALSPVGAVGLMQIMPATAEAMSKGDSKRLTTPELNIRLGTRHLKDLLDSYDRNLTLAIAAYNAGSGNVKRWQKG YGHLPQDEFVESIPFKETREYVKKVVTGMEMYQRLYRLPPYQQPNLQKKVNPASGHPGEQKVAQAISGH
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=284, Percent_Identity=32.3943661971831, Blast_Score=121, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 78250; Mature: 78250
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: PS50293 TPR_REGION ; PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNRTAIAAAAVLFCTALPASALTFKPADEALASAASRMQAKDYRTAKEAASKVNDKGVR CCCHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SFMVGMAAARLEQWEEAAAQLPAAAEGYPILADYALYYQGLSLAKLERHDQALTPLYRLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH KHYPESRLVRAALILYADTLAAAGHYNEAQQSYATFVERYPSGSDSISALYGSALCKEKL HHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH GDPIAAAKVLRGIYLNYPASSFSDKSARDLQRLTGAGTKVDPYTSAELFKRCGTLYGLGR CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH YLQAAEAYAEIPLSGESADFVAKLKLKKGQALYKARHYQQAQATFSNISGARHESDLWLA HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH RTLDKTGEQDQAFKLYMQLAQDRDSGNAGQEALLEAAYLKRFQRKWSEALPLFKQYLTAV HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQKPSNVLWESAWASYQSRNYEDAAAQFKKLTEREDLRDKSLYWLGKTLAATGDAKGAQQ HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH ALSTLAAEFPLGYYALISNNHAGEELPLPPKSITEALPMPSGFEREKALISLGFYDEAVR HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHEEECHHHHHHH ELSIGKKNRSAAGIARLYLEMENFNGAFHAMSNEKPKRGDKDNATIWGVAYPLAYKEDVA HHHCCCCCCHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEEECCHHHHHHHH RHAAANAIPESLVYAVMRQESNYFPAALSPVGAVGLMQIMPATAEAMSKGDSKRLTTPEL HHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NIRLGTRHLKDLLDSYDRNLTLAIAAYNAGSGNVKRWQKGYGHLPQDEFVESIPFKETRE EEEECHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHH YVKKVVTGMEMYQRLYRLPPYQQPNLQKKVNPASGHPGEQKVAQAISGH HHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MFNRTAIAAAAVLFCTALPASALTFKPADEALASAASRMQAKDYRTAKEAASKVNDKGVR CCCHHHHHHHHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH SFMVGMAAARLEQWEEAAAQLPAAAEGYPILADYALYYQGLSLAKLERHDQALTPLYRLL HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH KHYPESRLVRAALILYADTLAAAGHYNEAQQSYATFVERYPSGSDSISALYGSALCKEKL HHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH GDPIAAAKVLRGIYLNYPASSFSDKSARDLQRLTGAGTKVDPYTSAELFKRCGTLYGLGR CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH YLQAAEAYAEIPLSGESADFVAKLKLKKGQALYKARHYQQAQATFSNISGARHESDLWLA HHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH RTLDKTGEQDQAFKLYMQLAQDRDSGNAGQEALLEAAYLKRFQRKWSEALPLFKQYLTAV HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQKPSNVLWESAWASYQSRNYEDAAAQFKKLTEREDLRDKSLYWLGKTLAATGDAKGAQQ HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH ALSTLAAEFPLGYYALISNNHAGEELPLPPKSITEALPMPSGFEREKALISLGFYDEAVR HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHEEECHHHHHHH ELSIGKKNRSAAGIARLYLEMENFNGAFHAMSNEKPKRGDKDNATIWGVAYPLAYKEDVA HHHCCCCCCHHHHHHHHHHHHHCCCCHHEECCCCCCCCCCCCCCEEEEEECCHHHHHHHH RHAAANAIPESLVYAVMRQESNYFPAALSPVGAVGLMQIMPATAEAMSKGDSKRLTTPEL HHHHHHHHHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC NIRLGTRHLKDLLDSYDRNLTLAIAAYNAGSGNVKRWQKGYGHLPQDEFVESIPFKETRE EEEECHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHCCCHHHHH YVKKVVTGMEMYQRLYRLPPYQQPNLQKKVNPASGHPGEQKVAQAISGH HHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]