| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118926
Identifier: 197118926
GI number: 197118926
Start: 2950375
End: 2951079
Strand: Direct
Name: 197118926
Synonym: Gbem_2549
Alternate gene names: NA
Gene position: 2950375-2951079 (Clockwise)
Preceding gene: 197118925
Following gene: 197118927
Centisome position: 63.93
GC content: 61.13
Gene sequence:
>705_bases ATGGCCAACGGCAAACTGGAGAAACTGCTGATCCTCGCCTTCGAAAGCTCGGAAGACGCGGAACGCGGGAGCAAGACCGA GGCAAAGGAGACCTTCGAGGCGTTCATCAACCCGGAGAGCTACTCGCTTGAGTACAAGGTAAAAACCTCGGACGGCCAGG GCCAGGGTACCAGCGGTGCACAGGCAAAGTTCGAGTTCACCCTGCCGGAGGAACTCACCTTCGAGTTCCTCTTCGACAAC ACCGGCATCATCGACGGAACACAGAAGCCCGACGGCGTCGCCAAAGACGTGGACACGCTGCGCAAGATGCTGACCGGGTA CCAGGGGAGTTCCCACGAGCCGTACCACCTGAAGTTGGTGTGGGGGAGCCTGGTCTTCACCGGGCGGGCCATCGAGCTCA CCCTGACCCACAAGCTGTTCAACCCCGACGGCCAGCCGATCCGCACCGTCGCCAAGGTCAAATTCAAGAAGAGCATCGAG GACAAGAAGCGGGCGCGCAAGGAGAACAAGTCGTCTCCCGACCTCACGCACCAGCGGAAGGTGAAGGCGGGCGATACGCT GCCGCTTATGTGCTTCCGGATCTACGGGGACCCGAGGCATTACCTGGAGGTGGCACGGGTAAACATGCTGAACAACTTCC GGGCGCTCGTCCCGGGCACGAACCTGCTCTTTCCCCCCCTCGACAAAAAGGGGACGCCGCAGTGA
Upstream 100 bases:
>100_bases CGGGGGGCGGGCGCGCGAGCGAGGGTGAGTCTAGGGACGCATTGGTGGCCGAGTGCGTAGAACAGGTACTGCAGATACTC CAGAATAAGGCGGAGCGCTG
Downstream 100 bases:
>100_bases GCACCGAGTCGACCATTCCCACGCCAGCGACGCCGGACGTCTGCACGGTCGACCTCCTTGTGGAGGGTACGTCCATTCCG GGCGAGTACCATGTCCTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 233
Protein sequence:
>234_residues MANGKLEKLLILAFESSEDAERGSKTEAKETFEAFINPESYSLEYKVKTSDGQGQGTSGAQAKFEFTLPEELTFEFLFDN TGIIDGTQKPDGVAKDVDTLRKMLTGYQGSSHEPYHLKLVWGSLVFTGRAIELTLTHKLFNPDGQPIRTVAKVKFKKSIE DKKRARKENKSSPDLTHQRKVKAGDTLPLMCFRIYGDPRHYLEVARVNMLNNFRALVPGTNLLFPPLDKKGTPQ
Sequences:
>Translated_234_residues MANGKLEKLLILAFESSEDAERGSKTEAKETFEAFINPESYSLEYKVKTSDGQGQGTSGAQAKFEFTLPEELTFEFLFDN TGIIDGTQKPDGVAKDVDTLRKMLTGYQGSSHEPYHLKLVWGSLVFTGRAIELTLTHKLFNPDGQPIRTVAKVKFKKSIE DKKRARKENKSSPDLTHQRKVKAGDTLPLMCFRIYGDPRHYLEVARVNMLNNFRALVPGTNLLFPPLDKKGTPQ >Mature_233_residues ANGKLEKLLILAFESSEDAERGSKTEAKETFEAFINPESYSLEYKVKTSDGQGQGTSGAQAKFEFTLPEELTFEFLFDNT GIIDGTQKPDGVAKDVDTLRKMLTGYQGSSHEPYHLKLVWGSLVFTGRAIELTLTHKLFNPDGQPIRTVAKVKFKKSIED KKRARKENKSSPDLTHQRKVKAGDTLPLMCFRIYGDPRHYLEVARVNMLNNFRALVPGTNLLFPPLDKKGTPQ
Specific function: Unknown
COG id: COG1652
COG function: function code S; Uncharacterized protein containing LysM domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26285; Mature: 26154
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANGKLEKLLILAFESSEDAERGSKTEAKETFEAFINPESYSLEYKVKTSDGQGQGTSGA CCCCCEEEEEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC QAKFEFTLPEELTFEFLFDNTGIIDGTQKPDGVAKDVDTLRKMLTGYQGSSHEPYHLKLV CEEEEEECCHHHEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE WGSLVFTGRAIELTLTHKLFNPDGQPIRTVAKVKFKKSIEDKKRARKENKSSPDLTHQRK EEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH VKAGDTLPLMCFRIYGDPRHYLEVARVNMLNNFRALVPGTNLLFPPLDKKGTPQ CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure ANGKLEKLLILAFESSEDAERGSKTEAKETFEAFINPESYSLEYKVKTSDGQGQGTSGA CCCCEEEEEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCC QAKFEFTLPEELTFEFLFDNTGIIDGTQKPDGVAKDVDTLRKMLTGYQGSSHEPYHLKLV CEEEEEECCHHHEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEE WGSLVFTGRAIELTLTHKLFNPDGQPIRTVAKVKFKKSIEDKKRARKENKSSPDLTHQRK EEEEEEECCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH VKAGDTLPLMCFRIYGDPRHYLEVARVNMLNNFRALVPGTNLLFPPLDKKGTPQ CCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA