| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is ppnK
Identifier: 197118822
GI number: 197118822
Start: 2834740
End: 2835606
Strand: Reverse
Name: ppnK
Synonym: Gbem_2445
Alternate gene names: 197118822
Gene position: 2835606-2834740 (Counterclockwise)
Preceding gene: 197118826
Following gene: 197118821
Centisome position: 61.44
GC content: 63.32
Gene sequence:
>867_bases ATGAAAAAAATCGCCATTTTTGCCAAAGTCCACGACCCGCGTGCGCTGGCTGTAGCGGAGGAGCTGATCGAGTGGCTGGC GGCACGCGGCGTGACCGCGCACGTCGAGGAGCATCTTTCGAAAAGGCTCAGGCGCACCACCCTGGCCGAGAGTTCTGAGA GTACGGAAATCGCGGCCGACGCCGATCTGGTGGTGGTTTTGGGCGGCGACGGCACCCTCATCGCCGCGGCGAGGCTCGTC GGCGAGCGGGACGTCCCCATCCTGGCGGTGAACCTCGGGAGCCTCGGTTTTCTCACCGAGATCACCCTGAACGAACTCTA CCCCTCGGTGGAGCGCTGCCTGGCAGGCGACTTCGAGGTGAGCGAGCGGATGATGCTGATGGCGAGCGTGGAGCGCTCCG GGGAAGTCGTGGAACTGCACCGGGTGCTGAACGATGTGGTGATCAACAAGGGGGCCTTGGCGAGGATCATCGACATGGAG ACCTCGGTTAACGGCCGCTACCTGACCACCTTCAAGGCCGACGGTCTGATCGTCTCCACACCGACCGGCTCCACCGGCTA TTCGCTCTCGGCGAACGGCCCCATCCTGCACCCGGAACTCGAGTGCATCTCGCTCACCCCCATTTGCCCGCATACCCTCA CCAACCGCCCGCTGGTTATGGCCGCGGACGCGCACATCGCCATCAAGCTTAAGTACGCACCGGACGAATCGGTCTTTCTC ACCCTCGACGGGCAGGTGGGGATGAAGCTCCTCTCAGGCGACGTGGTGCAGATCACCAAGGCGGCGCATGTGACCCGCCT GATCCAGTCCCGCAGCAAGGACTACTTCGAGGTCCTGAGGACCAAGCTCAAATGGGGCGAGAGGTGA
Upstream 100 bases:
>100_bases TGGTGTTTGTAGCTGTGTCTTTCCGTGCCAGTTTCCGTTGGACATGATACTACATCTGTGCTAGTAAATCCTAAATTACA TTACAAGTAAAGGCCTCCTG
Downstream 100 bases:
>100_bases GGCGTTGCTGAGAGAACTGCAGATAACGAACCTGGCCATTATCGAGAAGCTGCACGTCGAGTTCGCCCCGGGGCTAAACA TCCTCACCGGCGAGACCGGC
Product: ATP-NAD kinase
Products: NA
Alternate protein names: Poly(P)/ATP NAD kinase
Number of amino acids: Translated: 288; Mature: 288
Protein sequence:
>288_residues MKKIAIFAKVHDPRALAVAEELIEWLAARGVTAHVEEHLSKRLRRTTLAESSESTEIAADADLVVVLGGDGTLIAAARLV GERDVPILAVNLGSLGFLTEITLNELYPSVERCLAGDFEVSERMMLMASVERSGEVVELHRVLNDVVINKGALARIIDME TSVNGRYLTTFKADGLIVSTPTGSTGYSLSANGPILHPELECISLTPICPHTLTNRPLVMAADAHIAIKLKYAPDESVFL TLDGQVGMKLLSGDVVQITKAAHVTRLIQSRSKDYFEVLRTKLKWGER
Sequences:
>Translated_288_residues MKKIAIFAKVHDPRALAVAEELIEWLAARGVTAHVEEHLSKRLRRTTLAESSESTEIAADADLVVVLGGDGTLIAAARLV GERDVPILAVNLGSLGFLTEITLNELYPSVERCLAGDFEVSERMMLMASVERSGEVVELHRVLNDVVINKGALARIIDME TSVNGRYLTTFKADGLIVSTPTGSTGYSLSANGPILHPELECISLTPICPHTLTNRPLVMAADAHIAIKLKYAPDESVFL TLDGQVGMKLLSGDVVQITKAAHVTRLIQSRSKDYFEVLRTKLKWGER >Mature_288_residues MKKIAIFAKVHDPRALAVAEELIEWLAARGVTAHVEEHLSKRLRRTTLAESSESTEIAADADLVVVLGGDGTLIAAARLV GERDVPILAVNLGSLGFLTEITLNELYPSVERCLAGDFEVSERMMLMASVERSGEVVELHRVLNDVVINKGALARIIDME TSVNGRYLTTFKADGLIVSTPTGSTGYSLSANGPILHPELECISLTPICPHTLTNRPLVMAADAHIAIKLKYAPDESVFL TLDGQVGMKLLSGDVVQITKAAHVTRLIQSRSKDYFEVLRTKLKWGER
Specific function: Catalyzes the phosphorylation of NAD to NADP. Utilizes ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus
COG id: COG0061
COG function: function code G; Predicted sugar kinase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the NAD kinase family
Homologues:
Organism=Homo sapiens, GI55743112, Length=326, Percent_Identity=28.5276073619632, Blast_Score=127, Evalue=8e-30, Organism=Escherichia coli, GI1788968, Length=288, Percent_Identity=33.6805555555556, Blast_Score=181, Evalue=5e-47, Organism=Caenorhabditis elegans, GI71999610, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6320794, Length=320, Percent_Identity=27.5, Blast_Score=151, Evalue=1e-37, Organism=Saccharomyces cerevisiae, GI6322509, Length=320, Percent_Identity=27.8125, Blast_Score=143, Evalue=3e-35, Organism=Saccharomyces cerevisiae, GI6325068, Length=239, Percent_Identity=31.7991631799163, Blast_Score=122, Evalue=6e-29, Organism=Drosophila melanogaster, GI28573826, Length=317, Percent_Identity=29.6529968454259, Blast_Score=128, Evalue=5e-30, Organism=Drosophila melanogaster, GI28573832, Length=317, Percent_Identity=29.6529968454259, Blast_Score=128, Evalue=5e-30, Organism=Drosophila melanogaster, GI28573830, Length=317, Percent_Identity=29.6529968454259, Blast_Score=128, Evalue=6e-30, Organism=Drosophila melanogaster, GI28573828, Length=317, Percent_Identity=29.6529968454259, Blast_Score=127, Evalue=6e-30, Organism=Drosophila melanogaster, GI161077047, Length=317, Percent_Identity=29.6529968454259, Blast_Score=127, Evalue=6e-30, Organism=Drosophila melanogaster, GI20129957, Length=272, Percent_Identity=31.9852941176471, Blast_Score=127, Evalue=8e-30, Organism=Drosophila melanogaster, GI24653422, Length=272, Percent_Identity=31.9852941176471, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI281363321, Length=272, Percent_Identity=31.9852941176471, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI281363323, Length=272, Percent_Identity=31.9852941176471, Blast_Score=127, Evalue=1e-29, Organism=Drosophila melanogaster, GI24653424, Length=272, Percent_Identity=31.9852941176471, Blast_Score=126, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PPNK_GEOBB (B5EFY8)
Other databases:
- EMBL: CP001124 - RefSeq: YP_002139249.1 - ProteinModelPortal: B5EFY8 - SMR: B5EFY8 - GeneID: 6782442 - GenomeReviews: CP001124_GR - KEGG: gbm:Gbem_2445 - HOGENOM: HBG713904 - OMA: DGTMLNA - ProtClustDB: CLSK828714 - GO: GO:0005737 - HAMAP: MF_00361 - InterPro: IPR016064 - InterPro: IPR017438 - InterPro: IPR017437 - InterPro: IPR002504 - Gene3D: G3DSA:2.60.200.30 - Gene3D: G3DSA:3.40.50.10330 - PANTHER: PTHR20275
Pfam domain/function: PF01513 NAD_kinase; SSF111331 ATP-NAD_kinase_PpnK-typ
EC number: =2.7.1.23
Molecular weight: Translated: 31350; Mature: 31350
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIAIFAKVHDPRALAVAEELIEWLAARGVTAHVEEHLSKRLRRTTLAESSESTEIAAD CCEEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC ADLVVVLGGDGTLIAAARLVGERDVPILAVNLGSLGFLTEITLNELYPSVERCLAGDFEV CCEEEEECCCCCEEHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCH SERMMLMASVERSGEVVELHRVLNDVVINKGALARIIDMETSVNGRYLTTFKADGLIVST HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCCEEEEC PTGSTGYSLSANGPILHPELECISLTPICPHTLTNRPLVMAADAHIAIKLKYAPDESVFL CCCCCCEEEECCCCEECCCCEEEEECCCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEE TLDGQVGMKLLSGDVVQITKAAHVTRLIQSRSKDYFEVLRTKLKWGER EECCCCCHHHHCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MKKIAIFAKVHDPRALAVAEELIEWLAARGVTAHVEEHLSKRLRRTTLAESSESTEIAAD CCEEEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC ADLVVVLGGDGTLIAAARLVGERDVPILAVNLGSLGFLTEITLNELYPSVERCLAGDFEV CCEEEEECCCCCEEHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCH SERMMLMASVERSGEVVELHRVLNDVVINKGALARIIDMETSVNGRYLTTFKADGLIVST HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCCEEEEC PTGSTGYSLSANGPILHPELECISLTPICPHTLTNRPLVMAADAHIAIKLKYAPDESVFL CCCCCCEEEECCCCEECCCCEEEEECCCCCCCCCCCCEEEEECCEEEEEEEECCCCEEEE TLDGQVGMKLLSGDVVQITKAAHVTRLIQSRSKDYFEVLRTKLKWGER EECCCCCHHHHCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA