| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
Click here to switch to the map view.
The map label for this gene is 197118745
Identifier: 197118745
GI number: 197118745
Start: 2741440
End: 2742732
Strand: Reverse
Name: 197118745
Synonym: Gbem_2364
Alternate gene names: NA
Gene position: 2742732-2741440 (Counterclockwise)
Preceding gene: 197118746
Following gene: 197118744
Centisome position: 59.43
GC content: 60.87
Gene sequence:
>1293_bases ATGATGCGCTACATGGCGATAACGCTACTGCTCTGGTTCCTCTGCCTGACGCCGTTAGCTGCGGCTGCGCCGCCACCTTA CTTCTACCCGTTCGTTAACCCTTACGAGGCGACGGTGATGGAACTCCCCAAGGAGTTCGAGGTCTCGCTCCCCAAGAAGG TGCCGCTGCGCGAGTTCGTGGTGCGCCCTTTCCCTAAAAGGGACATCCCCGAGGTCTTCTGGTACGAGAAGGGTCTTGAC TGCAGCCTCGCCTACCAGGATCACAAGGCGCCGCTCGTATTCCTGGTCGCCGGTTCCGGCTCCCGCTACGACGTGCCGCG CATGCAGAAGCTGCAAAAGGCGCTGTACCAGGCGGGATTCCACGTCCTTTCCATCACCTCGCCGACCCACATGGATTTCG TGGTCAACGCCTCGTCGGGGCTTCCCGGAATAGCCGAGGACGACGCCAAGGACCTGTACCGGGTGATGGATCTGGCCTGG CAGGAGGTCCGCGGCGACATCGCGGTCTCCGACTTCCTCCTGGCAGGCTACAGTCTGGGCGCTTTCGACGCCGCCTTTGT AGCGAAGCTCGACGAGGAGCAAAGGCACTTCAACTTCAAGCGGGTGCTCCTGCTCAACCCGCCGGTAAGCCTCTACGATT CGGTCCAGGCACTGGACCGGCTGCTGGTCGACAACATCCCCGGGGGGATGGACAACTTCGACGCCTGGTTCCACGACATC TTCACCGAGACCATGCACATCACCGAGTCCTGGGAGCCGGGGGGGCTGAGCGGCGAATCGATGTACCGTACCTATAAGCG GCTGCAGCCAAGCGAAGCAAACCTCGCCGCCCTGATCGGCCTGACTTCCAGGATGAACGCCGCCGACATGATCTTCACCG CCGACGTCATGAACGGGGGAGGGTACATCGTGCCGAAGAACGTCCGGCTCATCTCCACCACCTCGCTCACCCGCTACGCC ATCGTCGCCTACAAGACGCGGTTCATAGACTACTTTGACCAGTGGCTTTACCCCCATTACCAGAAGCACTCGCCCGGATT GACGCGCCAGGCCCTGTTGGCGCGGCAGGACCTGCACTACCTCGACCAGTACCTGAAAGGCTCCAAGAAATTCGGGCTGA TTCATAACGAGGACGACGTCATCCTTGTCCCGGGAAACATAGGTTATCTAAAGGAGATTTTCGGGGACCGGGCGCGGATC TATCCCAGCGGCGGCCACATGGGGAACATGTTCCACCCGAGCGTGGTCTCTTCCATGGTCGAGCTTCTTTCCGGCAAGGA GGTGGCGCAATGA
Upstream 100 bases:
>100_bases GACGCCGCGAGGGTCGCGGTCATTCCGCTTCACCCCGGCGCCCTCCGATATTTCAAAGAGGCAGGCCTCGTCCCCTGACG CACAATTCGGGAGGTAGATC
Downstream 100 bases:
>100_bases AAACGCGATGCGGAGCCACTATGCTGATCGCGGGAGCCGTATTGGCGCTCGTGCTGGAATCCGGCTGCAGCACGCTTCCC CAGGCTGGCCCCGGGCCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MMRYMAITLLLWFLCLTPLAAAAPPPYFYPFVNPYEATVMELPKEFEVSLPKKVPLREFVVRPFPKRDIPEVFWYEKGLD CSLAYQDHKAPLVFLVAGSGSRYDVPRMQKLQKALYQAGFHVLSITSPTHMDFVVNASSGLPGIAEDDAKDLYRVMDLAW QEVRGDIAVSDFLLAGYSLGAFDAAFVAKLDEEQRHFNFKRVLLLNPPVSLYDSVQALDRLLVDNIPGGMDNFDAWFHDI FTETMHITESWEPGGLSGESMYRTYKRLQPSEANLAALIGLTSRMNAADMIFTADVMNGGGYIVPKNVRLISTTSLTRYA IVAYKTRFIDYFDQWLYPHYQKHSPGLTRQALLARQDLHYLDQYLKGSKKFGLIHNEDDVILVPGNIGYLKEIFGDRARI YPSGGHMGNMFHPSVVSSMVELLSGKEVAQ
Sequences:
>Translated_430_residues MMRYMAITLLLWFLCLTPLAAAAPPPYFYPFVNPYEATVMELPKEFEVSLPKKVPLREFVVRPFPKRDIPEVFWYEKGLD CSLAYQDHKAPLVFLVAGSGSRYDVPRMQKLQKALYQAGFHVLSITSPTHMDFVVNASSGLPGIAEDDAKDLYRVMDLAW QEVRGDIAVSDFLLAGYSLGAFDAAFVAKLDEEQRHFNFKRVLLLNPPVSLYDSVQALDRLLVDNIPGGMDNFDAWFHDI FTETMHITESWEPGGLSGESMYRTYKRLQPSEANLAALIGLTSRMNAADMIFTADVMNGGGYIVPKNVRLISTTSLTRYA IVAYKTRFIDYFDQWLYPHYQKHSPGLTRQALLARQDLHYLDQYLKGSKKFGLIHNEDDVILVPGNIGYLKEIFGDRARI YPSGGHMGNMFHPSVVSSMVELLSGKEVAQ >Mature_430_residues MMRYMAITLLLWFLCLTPLAAAAPPPYFYPFVNPYEATVMELPKEFEVSLPKKVPLREFVVRPFPKRDIPEVFWYEKGLD CSLAYQDHKAPLVFLVAGSGSRYDVPRMQKLQKALYQAGFHVLSITSPTHMDFVVNASSGLPGIAEDDAKDLYRVMDLAW QEVRGDIAVSDFLLAGYSLGAFDAAFVAKLDEEQRHFNFKRVLLLNPPVSLYDSVQALDRLLVDNIPGGMDNFDAWFHDI FTETMHITESWEPGGLSGESMYRTYKRLQPSEANLAALIGLTSRMNAADMIFTADVMNGGGYIVPKNVRLISTTSLTRYA IVAYKTRFIDYFDQWLYPHYQKHSPGLTRQALLARQDLHYLDQYLKGSKKFGLIHNEDDVILVPGNIGYLKEIFGDRARI YPSGGHMGNMFHPSVVSSMVELLSGKEVAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48655; Mature: 48655
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRYMAITLLLWFLCLTPLAAAAPPPYFYPFVNPYEATVMELPKEFEVSLPKKVPLREFV CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHH VRPFPKRDIPEVFWYEKGLDCSLAYQDHKAPLVFLVAGSGSRYDVPRMQKLQKALYQAGF HCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC HVLSITSPTHMDFVVNASSGLPGIAEDDAKDLYRVMDLAWQEVRGDIAVSDFLLAGYSLG EEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC AFDAAFVAKLDEEQRHFNFKRVLLLNPPVSLYDSVQALDRLLVDNIPGGMDNFDAWFHDI HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FTETMHITESWEPGGLSGESMYRTYKRLQPSEANLAALIGLTSRMNAADMIFTADVMNGG HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHCCCHHHEEEEEEEECCC GYIVPKNVRLISTTSLTRYAIVAYKTRFIDYFDQWLYPHYQKHSPGLTRQALLARQDLHY CEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LDQYLKGSKKFGLIHNEDDVILVPGNIGYLKEIFGDRARIYPSGGHMGNMFHPSVVSSMV HHHHHCCCCCCCEEECCCCEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH ELLSGKEVAQ HHHCCCCCCC >Mature Secondary Structure MMRYMAITLLLWFLCLTPLAAAAPPPYFYPFVNPYEATVMELPKEFEVSLPKKVPLREFV CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHH VRPFPKRDIPEVFWYEKGLDCSLAYQDHKAPLVFLVAGSGSRYDVPRMQKLQKALYQAGF HCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC HVLSITSPTHMDFVVNASSGLPGIAEDDAKDLYRVMDLAWQEVRGDIAVSDFLLAGYSLG EEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC AFDAAFVAKLDEEQRHFNFKRVLLLNPPVSLYDSVQALDRLLVDNIPGGMDNFDAWFHDI HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH FTETMHITESWEPGGLSGESMYRTYKRLQPSEANLAALIGLTSRMNAADMIFTADVMNGG HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEHHHCCCHHHEEEEEEEECCC GYIVPKNVRLISTTSLTRYAIVAYKTRFIDYFDQWLYPHYQKHSPGLTRQALLARQDLHY CEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LDQYLKGSKKFGLIHNEDDVILVPGNIGYLKEIFGDRARIYPSGGHMGNMFHPSVVSSMV HHHHHCCCCCCCEEECCCCEEEECCCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH ELLSGKEVAQ HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA