| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118681
Identifier: 197118681
GI number: 197118681
Start: 2671515
End: 2672411
Strand: Reverse
Name: 197118681
Synonym: Gbem_2300
Alternate gene names: NA
Gene position: 2672411-2671515 (Counterclockwise)
Preceding gene: 197118682
Following gene: 197118680
Centisome position: 57.91
GC content: 60.2
Gene sequence:
>897_bases ATGTCCCCAAAACACTACGGCGCCTGGTTGATCGCCGCCTCCGCAGCAGGTTTTGCTACCCTCGGCATCCTCATCAAGAG CGCCTTTTCCGGCGGCGCCAACATCACCACGGTACTTGCCGGGCGGTTCCTGGTAGCGTCGTTTTTTCTGTTCATCTATC TCAGGGTGCGCAAGACCCCGCTTGTCATCGGGCGCAAATCCTCGCTGCAACTGCTGCTCATGGGAATGATCGGCTACGGC GGCATGTCCATGCTCTACGCCAACGCCATCCACTACCTCCCAGCGTCCCTGACCGGGATGCTTCTTTACACCTACCCGGC GCTCGTCACCGTCATCGCGCTGATCGTGGGTGAAGAGCGCTTCAACGCCGCCAAGGGTGTGGCGCTGGTGGTCTGCAGTG CCGGTCTGGTGCTGCTATTGGGTGCCTCGTTCGATGGCGCGCGGCTGGAGGGAGTACTCTGCACTTTGGGGGCGGCCGGG ATTTACAGTTGTTACATCATCATCGGCAACCGGATTCTAAAGGACATCGACCCGCTGGTCACCTCATTGTGGGTCTGTGC CTCCGCAGGATTTACCTTTCTCTTCTATGGTGTCGCTACCGGCGGCCTCACCCTGGACCTCGCGCCCGTTGGGTGGCTTT CCATCCTGGGGATCGCCCTGTTCCCAACGCTAATTGCGGTCGTCGGTTTCTTTGCCGGGCTACGCTACGTCGGCGCCACC AACGCCTCCATCATCAGCATGCTTGAGCCGTTGATCACCGTGCTTTTATCGGCGCTTCTTCTGGGGGAGCGGATCACCGC GCTGCAAGGTTTCGGCGGAGCGGTCCTTTTATTCGGCGGCCTTATCCTGCAGCTCTGGGGAAACGAAGCGCGTCGCGAGA CGGTCATCGAAGTCTAA
Upstream 100 bases:
>100_bases ACCGAGCACTGGTACGACCAGCTCTTCCTGGTCAGCCACGACGTGAGTTTCACCGAGATTACCGATCAGACCATCCAGCT CGACTAGAGGAATTTGCTCC
Downstream 100 bases:
>100_bases AGCCGTTACCTCGCCTTACCTTATAGGAGTAGGTTGCCCGGGCTCTCTCTCAGTGACGGAGGCGAATGAGTCCACCCTGC GCACCATAGGTTATTCGAAG
Product: membrane protein
Products: NA
Alternate protein names: Transporter Of Drug/Metabolite Transporter Superfamily; Drug/Metabolite Transporter; Transmembrane Protein; Drug/Metabolite Transporter Protein; Drug/Metabolite Transporter Superfamily Permease
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MSPKHYGAWLIAASAAGFATLGILIKSAFSGGANITTVLAGRFLVASFFLFIYLRVRKTPLVIGRKSSLQLLLMGMIGYG GMSMLYANAIHYLPASLTGMLLYTYPALVTVIALIVGEERFNAAKGVALVVCSAGLVLLLGASFDGARLEGVLCTLGAAG IYSCYIIIGNRILKDIDPLVTSLWVCASAGFTFLFYGVATGGLTLDLAPVGWLSILGIALFPTLIAVVGFFAGLRYVGAT NASIISMLEPLITVLLSALLLGERITALQGFGGAVLLFGGLILQLWGNEARRETVIEV
Sequences:
>Translated_298_residues MSPKHYGAWLIAASAAGFATLGILIKSAFSGGANITTVLAGRFLVASFFLFIYLRVRKTPLVIGRKSSLQLLLMGMIGYG GMSMLYANAIHYLPASLTGMLLYTYPALVTVIALIVGEERFNAAKGVALVVCSAGLVLLLGASFDGARLEGVLCTLGAAG IYSCYIIIGNRILKDIDPLVTSLWVCASAGFTFLFYGVATGGLTLDLAPVGWLSILGIALFPTLIAVVGFFAGLRYVGAT NASIISMLEPLITVLLSALLLGERITALQGFGGAVLLFGGLILQLWGNEARRETVIEV >Mature_297_residues SPKHYGAWLIAASAAGFATLGILIKSAFSGGANITTVLAGRFLVASFFLFIYLRVRKTPLVIGRKSSLQLLLMGMIGYGG MSMLYANAIHYLPASLTGMLLYTYPALVTVIALIVGEERFNAAKGVALVVCSAGLVLLLGASFDGARLEGVLCTLGAAGI YSCYIIIGNRILKDIDPLVTSLWVCASAGFTFLFYGVATGGLTLDLAPVGWLSILGIALFPTLIAVVGFFAGLRYVGATN ASIISMLEPLITVLLSALLLGERITALQGFGGAVLLFGGLILQLWGNEARRETVIEV
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31294; Mature: 31163
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPKHYGAWLIAASAAGFATLGILIKSAFSGGANITTVLAGRFLVASFFLFIYLRVRKTP CCCCHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE LVIGRKSSLQLLLMGMIGYGGMSMLYANAIHYLPASLTGMLLYTYPALVTVIALIVGEER EEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH FNAAKGVALVVCSAGLVLLLGASFDGARLEGVLCTLGAAGIYSCYIIIGNRILKDIDPLV HHHHCCHHHHHHHHCHHEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH TSLWVCASAGFTFLFYGVATGGLTLDLAPVGWLSILGIALFPTLIAVVGFFAGLRYVGAT HHHHHHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NASIISMLEPLITVLLSALLLGERITALQGFGGAVLLFGGLILQLWGNEARRETVIEV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCC >Mature Secondary Structure SPKHYGAWLIAASAAGFATLGILIKSAFSGGANITTVLAGRFLVASFFLFIYLRVRKTP CCCHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCE LVIGRKSSLQLLLMGMIGYGGMSMLYANAIHYLPASLTGMLLYTYPALVTVIALIVGEER EEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH FNAAKGVALVVCSAGLVLLLGASFDGARLEGVLCTLGAAGIYSCYIIIGNRILKDIDPLV HHHHCCHHHHHHHHCHHEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH TSLWVCASAGFTFLFYGVATGGLTLDLAPVGWLSILGIALFPTLIAVVGFFAGLRYVGAT HHHHHHHHCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NASIISMLEPLITVLLSALLLGERITALQGFGGAVLLFGGLILQLWGNEARRETVIEV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA