| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118641
Identifier: 197118641
GI number: 197118641
Start: 2629115
End: 2629957
Strand: Reverse
Name: 197118641
Synonym: Gbem_2260
Alternate gene names: NA
Gene position: 2629957-2629115 (Counterclockwise)
Preceding gene: 197118643
Following gene: 197118640
Centisome position: 56.99
GC content: 58.13
Gene sequence:
>843_bases ATGCGCAAGATCAGTTATAGCTGCGAGGTGCATGCAGCGTTCGACACCATCTGGAAACTCATCATCGAAAAGGTTGAGCA GCCGCAAACGTACCTGCCGGGCGCGGTCCAGTCGCGCATCCTGCAGCATTACGGCAACGGGCTTTTACGGGAGGTTCGCG GGGAGGGGCTGCTGATCAAGGAGAAGGTGGTGATTGACAAGACCCACGGCGAGGTGCACTACTTCCTAATGGAGCACCCG CTCTTTACCGGGCGCGTCATCAACCGTGTGGTTCCTTCCTCGGTGCAGAGCCCTGTGGCCCCGCAGATCCTCAGCATCGA GGTCGACTGGACGCCGAAGGATGATGAGGCCGAGAGAATGATCCAGGCGACGATACCGGAGCAGATCCAGCGGGAGGTGC TGAGCCTCAAACAGCTGGCAGAAGCCATGGAAAAAGAGGAATCGCTGCCGTTGCACACCCCTTATGCTTTCGGCATCACC ATGACCCTCACTTTCAGCGACGCGCTGGAAAAGGTGCAGCAGGAGCTGCAGAAAGAGGGCTTCGGCATCATCTCTTACAT AGACATCAAAAAGAAATTCCAGGAGAAGCTGCACAAGGATTTTCGCAACTACCAGATCCTGGGAGCCTGCAACCCCGGTC TCGCCTACCAGGCGTTCGGCATCGAGATCAACATCGGCACCCTGCTGCCGTGCAACGTCGTGGTCTATTCCCTTTCGGAG GGGCGTACCGTGGTGATGGTCATGGACCCGGTCGCTGCGCTCTCGTTGGTGGGGAACAGCCAGTTGACCGAACTGGCTGA GACGGTCAAGCAGAGCATGCAGAGGGTGATCGCCGCCCTTTGA
Upstream 100 bases:
>100_bases AGTTGGTGATGTTTTTTCCTGCTGCTTTTCGCTTGCTTTTGTCAAGCCGCTTTTCGCTTACTTTGGCTTCTTTTCCGCCA ACGGCAGGAGGTGCCAGGTC
Downstream 100 bases:
>100_bases CGCTGCGCAGCTATCGTAACGGGGGATGCCATGCTTAAGATAAAGCGCATATACGAGGAAGCCGACCCTAAAGACGGGCT GCGCATCCTGGTCGACCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MRKISYSCEVHAAFDTIWKLIIEKVEQPQTYLPGAVQSRILQHYGNGLLREVRGEGLLIKEKVVIDKTHGEVHYFLMEHP LFTGRVINRVVPSSVQSPVAPQILSIEVDWTPKDDEAERMIQATIPEQIQREVLSLKQLAEAMEKEESLPLHTPYAFGIT MTLTFSDALEKVQQELQKEGFGIISYIDIKKKFQEKLHKDFRNYQILGACNPGLAYQAFGIEINIGTLLPCNVVVYSLSE GRTVVMVMDPVAALSLVGNSQLTELAETVKQSMQRVIAAL
Sequences:
>Translated_280_residues MRKISYSCEVHAAFDTIWKLIIEKVEQPQTYLPGAVQSRILQHYGNGLLREVRGEGLLIKEKVVIDKTHGEVHYFLMEHP LFTGRVINRVVPSSVQSPVAPQILSIEVDWTPKDDEAERMIQATIPEQIQREVLSLKQLAEAMEKEESLPLHTPYAFGIT MTLTFSDALEKVQQELQKEGFGIISYIDIKKKFQEKLHKDFRNYQILGACNPGLAYQAFGIEINIGTLLPCNVVVYSLSE GRTVVMVMDPVAALSLVGNSQLTELAETVKQSMQRVIAAL >Mature_280_residues MRKISYSCEVHAAFDTIWKLIIEKVEQPQTYLPGAVQSRILQHYGNGLLREVRGEGLLIKEKVVIDKTHGEVHYFLMEHP LFTGRVINRVVPSSVQSPVAPQILSIEVDWTPKDDEAERMIQATIPEQIQREVLSLKQLAEAMEKEESLPLHTPYAFGIT MTLTFSDALEKVQQELQKEGFGIISYIDIKKKFQEKLHKDFRNYQILGACNPGLAYQAFGIEINIGTLLPCNVVVYSLSE GRTVVMVMDPVAALSLVGNSQLTELAETVKQSMQRVIAAL
Specific function: Unknown
COG id: COG3439
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31523; Mature: 31523
Theoretical pI: Translated: 5.92; Mature: 5.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKISYSCEVHAAFDTIWKLIIEKVEQPQTYLPGAVQSRILQHYGNGLLREVRGEGLLIK CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCEEEE EKVVIDKTHGEVHYFLMEHPLFTGRVINRVVPSSVQSPVAPQILSIEVDWTPKDDEAERM EEEEEECCCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHH IQATIPEQIQREVLSLKQLAEAMEKEESLPLHTPYAFGITMTLTFSDALEKVQQELQKEG HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCC FGIISYIDIKKKFQEKLHKDFRNYQILGACNPGLAYQAFGIEINIGTLLPCNVVVYSLSE CCEEEHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEECC GRTVVMVMDPVAALSLVGNSQLTELAETVKQSMQRVIAAL CCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRKISYSCEVHAAFDTIWKLIIEKVEQPQTYLPGAVQSRILQHYGNGLLREVRGEGLLIK CCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCEEEE EKVVIDKTHGEVHYFLMEHPLFTGRVINRVVPSSVQSPVAPQILSIEVDWTPKDDEAERM EEEEEECCCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCCCHHHHHH IQATIPEQIQREVLSLKQLAEAMEKEESLPLHTPYAFGITMTLTFSDALEKVQQELQKEG HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCC FGIISYIDIKKKFQEKLHKDFRNYQILGACNPGLAYQAFGIEINIGTLLPCNVVVYSLSE CCEEEHHHHHHHHHHHHHHHHHCEEEEEECCCCCEEEEEEEEEECCCCCCCEEEEEEECC GRTVVMVMDPVAALSLVGNSQLTELAETVKQSMQRVIAAL CCEEEEEECCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA