Click here to switch to the map view.

The map label for this gene is atoS [C]

Identifier: 197118607

GI number: 197118607

Start: 2589884

End: 2592274

Strand: Direct

Name: atoS [C]

Synonym: Gbem_2226

Alternate gene names: 197118607

Gene position: 2589884-2592274 (Clockwise)

Preceding gene: 197118603

Following gene: 197118608

Centisome position: 56.12

GC content: 60.1

Gene sequence:

>2391_bases
ATGGCCGCCTCAGAAAATAAAGCAGTCCATTTCACCGCAAACTGCACGGTGCTGCTGGCCTTCTTCGTCGCGCTCTTTTT
CCCTGCCGGGTACTTCGTCGTGAGTTACCAGTATGTGGTAGGGAGCCTGGAGACCGAAGCCGAGATCAACGCCAGAATTG
TAGGTGGGTTGATCGACGACACCCCCGGATCGCTGCATACTCAGGCCCACCGGCTGGGGGGTATGCTTCCGCAGAACCAG
AATTCGGGACACCCGGACTTCAGCAGGATCCTCGACGCCGACGGCCGGGTGCTTGCCACCAGGGGCAAGCCACCTGCCCA
ACCGACGATCACCAAGTCGCACGACATCTTTTTCGCCGGGAAGACCACCGGCAGCATGAAAATCAGCCGCTCGCTCAGGC
CTATCTTGACGAAGACCGCACTGGTGGCCGTTTTCGGTCTCTCCGTCGGGCTGGTGGTATTCATACTTCTCCCCTTCCGC
GCCATCAACCGCGCCAACCGTAAGCTGCAGGATTCGTACAATTTCCTTACCAAAGTCATGGAGAGCAGCGCCAACGCGGT
GATCGTTCTCAATCCGGACGGCAAGATCGCCATGGTTAACGGCCGGTGCACCGAGATGAGCGGCTACCGCCCCGAGGATC
TGTACGGCTCGGAAATAGACCGGCTGCTCTGCCCGCAATCGTTCGACACGGTCCTGGCGCAGCTGCGCCAGGTGTCGAGC
GGCAAGGCCGAGATCGTCAAGTTCGAGACCGACCTGCTCAGAAAGGACGGCAGCACCATTGCCATCGCCTGCGGCGCGAC
CCCGGTATACCAGGAAGGACGTATCGCCAGCACGGTGCTCTCGGTGGAGAACATCACCGAGCGGAGGCATTCGGTCGAAC
AGCTCAAAGCCGCCAAGGAATACACCGAGAACCTGATCCAGGCTGCCTGCGTGATGATCCTGGGGCTCGACCTGAAAGGG
AACGTGACCCTTCTGAACCGCACCGCCGAGGAGGTGACCGGGTACAACACCGACGAGCTGATCGGAAAGAACTGGTTCGA
GACGGTGATGGGGGCAGAAGCTTTCTACAAGATGTGCACCATCCCGGGGATGGTTGGCGAAAGCGTGAACCGCTGCGCCT
TCGAGAATCAGATCGTCACCAAGGAAGGGCTGGTACGCACCATCTCGTGGCGCAACAGCGCCATCATCGAAAAGGACGAA
CGGCTGGGGACGCTCTGTTTCGGGATCGACATCACCGAGCACCGCAAGATCGAGGCGCAACTCAGGCACTCGCAGAAGAT
GGAGTCCATCGGGCAGTTGGCCGGCGGCGTCGCCCATGACTTCAACAACATGCTGAGCGTGATCATGGGATACGCCCAGC
TCTGCCAGATAGAGGTAGAGGAAAACAGCTCGCTTTGGCTCTACCTCCAGGAGGTCGTCAAGGCGGGCGAGCGCTCGCGC
GACATGGTGAGAAAGCTGCTCGCCTTCTCTCGTAAGGAGATCATCTCTCCTAGGGCGGTCGACCTGAACATCCACTGCAT
CGAGACGGAAAAGACCTTGAGCCGCCTGATCGGCGAGGAGATCAAGCTCAACTTCATCCCTGCCACTACGCTTTGGACCG
TGAAGATCGACCCGTCGCAGGTGGACCAGATCCTGATGAACCTGGCGGTCAACGCCCGCGACGCCATGCCCGAAGGGGGG
TGCCTGACTATCAGCACCGAGAACGCTACAGTGGACGAGGCATTCTGCGATTACCGCCTCGACGCGCGCCCGGGAGAGTA
TGCCTGCCTCACCGTGGCGGATACCGGTTTCGGCATGGACAGAGAACTCACCAAAAGGATCTTCGAGCCCTTCTTCACCA
CCAAGGACGTCGGCAAGGGAACCGGACTCGGGCTCGCCACGGTTTACGGCATCGTCACCCAGAATGGCGGTTTCCTCGAC
GTCGACAGCGAGCCGGGAGAAGGAACCTCGTTCCGGATCTACCTGCCGCGCCTGAAGGACGAGCCCGTGGAAGAAGCAAA
ACCGTGCCCCGACCAGCCCAAAGGATCGGGCACGATTTTGGTCGTAGAGGACGACCCCATGCTCCGGACCATGGCGACCC
AGATGCTGGAAAAGATCGGCTACCGCGTCATCCAGGCCGAGGGGCCTCAAGTCGCCCTTTCCATCTGTGCGGATCTGACC
ACGTTCATCGACTTGGTGCTGACCGACGTCATCATGCCCGAGATGAACGGACTGGAGATGGCACGGGGAATCGCCGCACT
GCGCCCCGACACCAAGGTGCTCTTTATGACCGGTTACTCTTCCGACGTCATTGCGAGCCACGGCATCATTCAACCAGGAC
TGCACTACGTCGAGAAGCCGTTCAACATGGAGGGGCTGCATGCGAAGATCCTGGAGATTCAGGCGGCCTGA

Upstream 100 bases:

>100_bases
TTAATGTCTCGCCCTGCAATGGCCCGGCACTACCTGTTGAAACAGTTTTCCTCCGCACCAAAGTCCATTCTTTCTTTGCT
GATGCAAGGAGCGTTACCCA

Downstream 100 bases:

>100_bases
CTTTCAATAGCTGCACGCGTCCAGACAGAAAAGGGACAAGCTACTTCACAATAAGTAGCCTTGCCCCTTTTTTTTGCCCA
AATAGAGTCAGTCTGCTAGA

Product: PAS/PAS domain-containing sensor histidine kinase response regulator

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 796; Mature: 795

Protein sequence:

>796_residues
MAASENKAVHFTANCTVLLAFFVALFFPAGYFVVSYQYVVGSLETEAEINARIVGGLIDDTPGSLHTQAHRLGGMLPQNQ
NSGHPDFSRILDADGRVLATRGKPPAQPTITKSHDIFFAGKTTGSMKISRSLRPILTKTALVAVFGLSVGLVVFILLPFR
AINRANRKLQDSYNFLTKVMESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSS
GKAEIVKFETDLLRKDGSTIAIACGATPVYQEGRIASTVLSVENITERRHSVEQLKAAKEYTENLIQAACVMILGLDLKG
NVTLLNRTAEEVTGYNTDELIGKNWFETVMGAEAFYKMCTIPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAIIEKDE
RLGTLCFGIDITEHRKIEAQLRHSQKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSR
DMVRKLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQILMNLAVNARDAMPEGG
CLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMDRELTKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLD
VDSEPGEGTSFRIYLPRLKDEPVEEAKPCPDQPKGSGTILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLT
TFIDLVLTDVIMPEMNGLEMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKPFNMEGLHAKILEIQAA

Sequences:

>Translated_796_residues
MAASENKAVHFTANCTVLLAFFVALFFPAGYFVVSYQYVVGSLETEAEINARIVGGLIDDTPGSLHTQAHRLGGMLPQNQ
NSGHPDFSRILDADGRVLATRGKPPAQPTITKSHDIFFAGKTTGSMKISRSLRPILTKTALVAVFGLSVGLVVFILLPFR
AINRANRKLQDSYNFLTKVMESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSS
GKAEIVKFETDLLRKDGSTIAIACGATPVYQEGRIASTVLSVENITERRHSVEQLKAAKEYTENLIQAACVMILGLDLKG
NVTLLNRTAEEVTGYNTDELIGKNWFETVMGAEAFYKMCTIPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAIIEKDE
RLGTLCFGIDITEHRKIEAQLRHSQKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSR
DMVRKLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQILMNLAVNARDAMPEGG
CLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMDRELTKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLD
VDSEPGEGTSFRIYLPRLKDEPVEEAKPCPDQPKGSGTILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLT
TFIDLVLTDVIMPEMNGLEMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKPFNMEGLHAKILEIQAA
>Mature_795_residues
AASENKAVHFTANCTVLLAFFVALFFPAGYFVVSYQYVVGSLETEAEINARIVGGLIDDTPGSLHTQAHRLGGMLPQNQN
SGHPDFSRILDADGRVLATRGKPPAQPTITKSHDIFFAGKTTGSMKISRSLRPILTKTALVAVFGLSVGLVVFILLPFRA
INRANRKLQDSYNFLTKVMESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSSG
KAEIVKFETDLLRKDGSTIAIACGATPVYQEGRIASTVLSVENITERRHSVEQLKAAKEYTENLIQAACVMILGLDLKGN
VTLLNRTAEEVTGYNTDELIGKNWFETVMGAEAFYKMCTIPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAIIEKDER
LGTLCFGIDITEHRKIEAQLRHSQKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSRD
MVRKLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQILMNLAVNARDAMPEGGC
LTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMDRELTKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDV
DSEPGEGTSFRIYLPRLKDEPVEEAKPCPDQPKGSGTILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLTT
FIDLVLTDVIMPEMNGLEMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKPFNMEGLHAKILEIQAA

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=368, Percent_Identity=27.7173913043478, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI1790436, Length=241, Percent_Identity=30.7053941908714, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI48994928, Length=527, Percent_Identity=24.2884250474383, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1790300, Length=249, Percent_Identity=30.1204819277108, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788713, Length=241, Percent_Identity=29.045643153527, Blast_Score=83, Evalue=8e-17,
Organism=Escherichia coli, GI87081816, Length=368, Percent_Identity=26.0869565217391, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693157, Length=275, Percent_Identity=26.1818181818182, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 87474; Mature: 87343

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASENKAVHFTANCTVLLAFFVALFFPAGYFVVSYQYVVGSLETEAEINARIVGGLIDD
CCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHEEEEEHHHCCCCCCCCCCEEEEEEEECC
TPGSLHTQAHRLGGMLPQNQNSGHPDFSRILDADGRVLATRGKPPAQPTITKSHDIFFAG
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEE
KTTGSMKISRSLRPILTKTALVAVFGLSVGLVVFILLPFRAINRANRKLQDSYNFLTKVM
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSS
HCCCCEEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCC
GKAEIVKFETDLLRKDGSTIAIACGATPVYQEGRIASTVLSVENITERRHSVEQLKAAKE
CCEEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YTENLIQAACVMILGLDLKGNVTLLNRTAEEVTGYNTDELIGKNWFETVMGAEAFYKMCT
HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHC
IPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAIIEKDERLGTLCFGIDITEHRKIEAQ
CCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCEEEECCCCCEEEEEEEECHHCHHHHHH
LRHSQKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSR
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHHCCCCHH
DMVRKLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQ
HHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHCCCCEEEEEEECCEEEEEEECHHH
VDQILMNLAVNARDAMPEGGCLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMD
HHHHHHHHHCCHHHCCCCCCEEEEECCCCCHHHHHHCCEECCCCCCEEEEEEECCCCCCC
RELTKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPRLKD
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCEEECCCCCCCCCEEEEECCCCCC
EPVEEAKPCPDQPKGSGTILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLT
CCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
TFIDLVLTDVIMPEMNGLEMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKP
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCHHHHCCC
FNMEGLHAKILEIQAA
CCCCCCEEEEEEEECC
>Mature Secondary Structure 
AASENKAVHFTANCTVLLAFFVALFFPAGYFVVSYQYVVGSLETEAEINARIVGGLIDD
CCCCCCEEEEECCHHHHHHHHHHHHHCCCHHEEEEEHHHCCCCCCCCCCEEEEEEEECC
TPGSLHTQAHRLGGMLPQNQNSGHPDFSRILDADGRVLATRGKPPAQPTITKSHDIFFAG
CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEE
KTTGSMKISRSLRPILTKTALVAVFGLSVGLVVFILLPFRAINRANRKLQDSYNFLTKVM
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSS
HCCCCEEEEECCCCCEEEECCEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCC
GKAEIVKFETDLLRKDGSTIAIACGATPVYQEGRIASTVLSVENITERRHSVEQLKAAKE
CCEEEEEEHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
YTENLIQAACVMILGLDLKGNVTLLNRTAEEVTGYNTDELIGKNWFETVMGAEAFYKMCT
HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHC
IPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAIIEKDERLGTLCFGIDITEHRKIEAQ
CCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCEEEECCCCCEEEEEEEECHHCHHHHHH
LRHSQKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSR
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHHCCCCHH
DMVRKLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQ
HHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHCCCCEEEEEEECCEEEEEEECHHH
VDQILMNLAVNARDAMPEGGCLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMD
HHHHHHHHHCCHHHCCCCCCEEEEECCCCCHHHHHHCCEECCCCCCEEEEEEECCCCCCC
RELTKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPRLKD
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCEEECCCCCCCCCEEEEECCCCCC
EPVEEAKPCPDQPKGSGTILVVEDDPMLRTMATQMLEKIGYRVIQAEGPQVALSICADLT
CCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
TFIDLVLTDVIMPEMNGLEMARGIAALRPDTKVLFMTGYSSDVIASHGIIQPGLHYVEKP
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCCHHHHCCC
FNMEGLHAKILEIQAA
CCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA