| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is ybbP [H]
Identifier: 197118490
GI number: 197118490
Start: 2446354
End: 2448852
Strand: Reverse
Name: ybbP [H]
Synonym: Gbem_2108
Alternate gene names: 197118490
Gene position: 2448852-2446354 (Counterclockwise)
Preceding gene: 197118491
Following gene: 197118489
Centisome position: 53.06
GC content: 61.5
Gene sequence:
>2499_bases ATGGTTAACGCCAGGTTCCTGCTGCGCCAGGTGACCGGCGCCAAGAGGCAGTGCACGGTCTTCGTCCTCTGCGTCGCCCT CTCCATGATCACCCTGGTCTCCTTGGGTAGCTTCCGCGAAAGCGTGGAAAGCTCGCTTCTGCGCGACGCCCAGTCCCTCC ACTCAGCGGACATCATCATCAAGTCCCACTCTCCGGTCCCGCCTAACCTGGAGCGCGAACGGGCGGTTCTTAAGGACCGG CGCGAGATCAGGAGCGCCCGTTACTGGGAGTTCTATTCCGTGGTGCAAAAGCCCAGCGCCGACGCGTCGCTTTTGTGCAA CATCAAGGTCGTGGAGCCGGGATATCCCTTTTACGGCACGGTGCGCCTTGCCTCCGGCCGCCCCTTCGAAAAGGTGCTCT CGCCCGGGAGCCTGGTGGTGGAGCAGGCGCTCCTGGACCGCCTTCAACTTAAAATCGGGGACCCGCTGAGGATCGGGAAC GCGGTCCTGACCGTTAAGGACGTCGTGGTGCAGGAGCCGGACCGGCCGGTGAATTTCTTTGCCTTAGGCCCACGCGTCTT CGTCGCCGCGGCGGACCGCGACGCACTCGCCCTCATCGGCAAGGGAAGCCGCATCGAGCACGTCACGCTGGTCAAGGTGA CGGATCCCCCGAGGTTGGAACAGGTCGCCTCGGAGCTTCGCGCCGCAACCGACAACGACGGCCGGGTCAGGGTCGAGACC TACAAAAACGCCGGCTCGCGCGTGAAGCGCTTCTTCGACAACCTTCTCTTCTTCCTGAACCTAAGCGGCATCTTCACCCT GCTTCTTTCCGGCTTCGGCATCCAGAGCACGCTCTTCGCCCTTTTGAAGGAGCAGGAGCGGACCATAGCGGTGATGAAGG CCTTGGGCGCCAGGAGCCGCTTCATCATCGGGCATTTTCTGGGGCTCACCCTGATCCTCGGCCTCTTCGGCACCGTCGCG GGGCTCGCCGGTAGTTTCGCGCTGCAGCGCTATCTCCCCGCTCTTTTCAGCGGGCTGATACCGGCCCAGGTGACTCTCCA GGTCTCGACCTCGGCGATCTTCCAGGGTATGGCGATAGGCCTTTTGGTGGTGCTACTTTTCACCGCCCTCCCCCTCTACC GACTGAAGGAGGTGAAGCCCAAGGCCATCTTCGGCAAAGAGGAAACGGCCGCCCTTTGGAACCGATCCACCTGGATCATC GCAAGTCTGGGCGCTTTGTTCTTTCTCTCCATGGTGCTCATCCGCCTGCGCGACCTGAAGACTGGGCTTTATTTCATGCT TTCCCTGGTGTCGCTGATCCTCATCTCCTATCTCCTCGCCTGGGTCACCCTCCATTTCCTGAAGCGGAAACAGCCCAAGA ACCTCGCCTTGCGCCAGGCACTCAAGGGGCTTTTCCGGCCGCACAACGCCTCGCTTTCCATCATGGTCACCCTTTCGGCG GCCTTCGCCGTGATCTTCGCCATCAACCTCGTGGAGAAGAACCTCGACGCCACCTTCATCGAATCCTTCCCTCCCGGCGC CCCCAACGTCTTTTTCATCGACATCCAGCCCGGCCAGCGCGAAGCCTTTGGCCGCATGATCGGCCCCGGCGCGTCTTTTT ACCCCATCATAAAGGGGAACGTGACTGCGGTGAACGAGATCCCCCTAGATCAGGCACAGGAGCGAAAGTCCAGGGGCGAC AATCTGGCGCGAGAGATGAACCTCACCTACCGGGAGTACCTGCTCCCAGACGAGCGGATCGAGTCTGGAGAGACCCTGTT CCGGAAGGATTGGACCGAGCCGCAGGTCTCTGTGCTGGACACCGTGGTGAAGATGCACGACATGAAGGTAGGGGACCGGG TGAGCTTCCGCGTCCAGGGGCTCCCCATCACCGCACGCGTCTCCAGCGTGCGGACCCGCACCAGCAGCGGCTTCTCGCCC TTCTTCTACTTCGTCTTTCAGGAATCCGTGCTCTCGCAAGCGCCGCAGACCTTCTTTGCCGCCGTCAGGGTCGACAAAGC CGGCATCAGCGCCCTGCAAAACCGGGTGGTTTCCGCCTTTCCCAACGTGAGCGTCATCGACCTGACCGAGACCGTCACCG TCTTCGGCAGGATCATGCAGCGGCTCTCCAGCATCGTCAGTTTCTTCACCTCGTTCAGCGTCATTGCCGGGGTCCTGATC ATAATCAGTTCGGTCTTCGCCACGCGCTACGCGAGGATCCAGGAAGCGGTCTATTTCACCATACTGGGCGCGCGCAGGGC GTTCGTGCTCAAGGTCTTCGCTGCGGAGAACCTGGTCCTCGGGTTGGTGAGCGGCGTCATCGCGCTGCTTATTTCCCAGT TGGGGAGCCTCATCATCTGCCGCAAGGGGCTCGACATGACCTATGTGCCGTATCTCGGCGAGAGCCTTTTGTTGCTTTTG GCCACCACTTTGCTGGTGATGTTCGTAGGGCTCGCCGTGGCGCTCCCGATCCTCTACCAGAAGCCGGTGGCGTTTCTGCG GGAACAGTCGGAGGAATAG
Upstream 100 bases:
>100_bases GGCACCACCCTGATCCTTGTGACCCACAGCCCCGAGATCGCCCAGCGGGCGCATCGCGTGGTCACGCTCAAAGACGGCAG GATCGTCACGGGGCGGGAGC
Downstream 100 bases:
>100_bases AAAATCTGGGGCTGGGGGCTAGGGGCTGGGGGCTGGCAAAACCTCTCGGTCTTCAACTAGCCCCAGTCCCTAGCCCCTAG TCTCTGCCGTTAACCGCAGG
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 832; Mature: 832
Protein sequence:
>832_residues MVNARFLLRQVTGAKRQCTVFVLCVALSMITLVSLGSFRESVESSLLRDAQSLHSADIIIKSHSPVPPNLERERAVLKDR REIRSARYWEFYSVVQKPSADASLLCNIKVVEPGYPFYGTVRLASGRPFEKVLSPGSLVVEQALLDRLQLKIGDPLRIGN AVLTVKDVVVQEPDRPVNFFALGPRVFVAAADRDALALIGKGSRIEHVTLVKVTDPPRLEQVASELRAATDNDGRVRVET YKNAGSRVKRFFDNLLFFLNLSGIFTLLLSGFGIQSTLFALLKEQERTIAVMKALGARSRFIIGHFLGLTLILGLFGTVA GLAGSFALQRYLPALFSGLIPAQVTLQVSTSAIFQGMAIGLLVVLLFTALPLYRLKEVKPKAIFGKEETAALWNRSTWII ASLGALFFLSMVLIRLRDLKTGLYFMLSLVSLILISYLLAWVTLHFLKRKQPKNLALRQALKGLFRPHNASLSIMVTLSA AFAVIFAINLVEKNLDATFIESFPPGAPNVFFIDIQPGQREAFGRMIGPGASFYPIIKGNVTAVNEIPLDQAQERKSRGD NLAREMNLTYREYLLPDERIESGETLFRKDWTEPQVSVLDTVVKMHDMKVGDRVSFRVQGLPITARVSSVRTRTSSGFSP FFYFVFQESVLSQAPQTFFAAVRVDKAGISALQNRVVSAFPNVSVIDLTETVTVFGRIMQRLSSIVSFFTSFSVIAGVLI IISSVFATRYARIQEAVYFTILGARRAFVLKVFAAENLVLGLVSGVIALLISQLGSLIICRKGLDMTYVPYLGESLLLLL ATTLLVMFVGLAVALPILYQKPVAFLREQSEE
Sequences:
>Translated_832_residues MVNARFLLRQVTGAKRQCTVFVLCVALSMITLVSLGSFRESVESSLLRDAQSLHSADIIIKSHSPVPPNLERERAVLKDR REIRSARYWEFYSVVQKPSADASLLCNIKVVEPGYPFYGTVRLASGRPFEKVLSPGSLVVEQALLDRLQLKIGDPLRIGN AVLTVKDVVVQEPDRPVNFFALGPRVFVAAADRDALALIGKGSRIEHVTLVKVTDPPRLEQVASELRAATDNDGRVRVET YKNAGSRVKRFFDNLLFFLNLSGIFTLLLSGFGIQSTLFALLKEQERTIAVMKALGARSRFIIGHFLGLTLILGLFGTVA GLAGSFALQRYLPALFSGLIPAQVTLQVSTSAIFQGMAIGLLVVLLFTALPLYRLKEVKPKAIFGKEETAALWNRSTWII ASLGALFFLSMVLIRLRDLKTGLYFMLSLVSLILISYLLAWVTLHFLKRKQPKNLALRQALKGLFRPHNASLSIMVTLSA AFAVIFAINLVEKNLDATFIESFPPGAPNVFFIDIQPGQREAFGRMIGPGASFYPIIKGNVTAVNEIPLDQAQERKSRGD NLAREMNLTYREYLLPDERIESGETLFRKDWTEPQVSVLDTVVKMHDMKVGDRVSFRVQGLPITARVSSVRTRTSSGFSP FFYFVFQESVLSQAPQTFFAAVRVDKAGISALQNRVVSAFPNVSVIDLTETVTVFGRIMQRLSSIVSFFTSFSVIAGVLI IISSVFATRYARIQEAVYFTILGARRAFVLKVFAAENLVLGLVSGVIALLISQLGSLIICRKGLDMTYVPYLGESLLLLL ATTLLVMFVGLAVALPILYQKPVAFLREQSEE >Mature_832_residues MVNARFLLRQVTGAKRQCTVFVLCVALSMITLVSLGSFRESVESSLLRDAQSLHSADIIIKSHSPVPPNLERERAVLKDR REIRSARYWEFYSVVQKPSADASLLCNIKVVEPGYPFYGTVRLASGRPFEKVLSPGSLVVEQALLDRLQLKIGDPLRIGN AVLTVKDVVVQEPDRPVNFFALGPRVFVAAADRDALALIGKGSRIEHVTLVKVTDPPRLEQVASELRAATDNDGRVRVET YKNAGSRVKRFFDNLLFFLNLSGIFTLLLSGFGIQSTLFALLKEQERTIAVMKALGARSRFIIGHFLGLTLILGLFGTVA GLAGSFALQRYLPALFSGLIPAQVTLQVSTSAIFQGMAIGLLVVLLFTALPLYRLKEVKPKAIFGKEETAALWNRSTWII ASLGALFFLSMVLIRLRDLKTGLYFMLSLVSLILISYLLAWVTLHFLKRKQPKNLALRQALKGLFRPHNASLSIMVTLSA AFAVIFAINLVEKNLDATFIESFPPGAPNVFFIDIQPGQREAFGRMIGPGASFYPIIKGNVTAVNEIPLDQAQERKSRGD NLAREMNLTYREYLLPDERIESGETLFRKDWTEPQVSVLDTVVKMHDMKVGDRVSFRVQGLPITARVSSVRTRTSSGFSP FFYFVFQESVLSQAPQTFFAAVRVDKAGISALQNRVVSAFPNVSVIDLTETVTVFGRIMQRLSSIVSFFTSFSVIAGVLI IISSVFATRYARIQEAVYFTILGARRAFVLKVFAAENLVLGLVSGVIALLISQLGSLIICRKGLDMTYVPYLGESLLLLL ATTLLVMFVGLAVALPILYQKPVAFLREQSEE
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=386, Percent_Identity=25.9067357512953, Blast_Score=134, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 92037; Mature: 92037
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNARFLLRQVTGAKRQCTVFVLCVALSMITLVSLGSFRESVESSLLRDAQSLHSADIII CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE KSHSPVPPNLERERAVLKDRREIRSARYWEFYSVVQKPSADASLLCNIKVVEPGYPFYGT ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEE VRLASGRPFEKVLSPGSLVVEQALLDRLQLKIGDPLRIGNAVLTVKDVVVQEPDRPVNFF EEECCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEHHHHHCCCCCCEEEE ALGPRVFVAAADRDALALIGKGSRIEHVTLVKVTDPPRLEQVASELRAATDNDGRVRVET EECCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEE YKNAGSRVKRFFDNLLFFLNLSGIFTLLLSGFGIQSTLFALLKEQERTIAVMKALGARSR HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH FIIGHFLGLTLILGLFGTVAGLAGSFALQRYLPALFSGLIPAQVTLQVSTSAIFQGMAIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHH LLVVLLFTALPLYRLKEVKPKAIFGKEETAALWNRSTWIIASLGALFFLSMVLIRLRDLK HHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TGLYFMLSLVSLILISYLLAWVTLHFLKRKQPKNLALRQALKGLFRPHNASLSIMVTLSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHH AFAVIFAINLVEKNLDATFIESFPPGAPNVFFIDIQPGQREAFGRMIGPGASFYPIIKGN HHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEECCC VTAVNEIPLDQAQERKSRGDNLAREMNLTYREYLLPDERIESGETLFRKDWTEPQVSVLD EEEEECCCCCHHHHHHHHCCHHHHHHCCHHHHHCCCHHHHCCCCHHHHCCCCCHHHHHHH TVVKMHDMKVGDRVSFRVQGLPITARVSSVRTRTSSGFSPFFYFVFQESVLSQAPQTFFA HHHHHHCCCCCCCEEEEEECCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH AVRVDKAGISALQNRVVSAFPNVSVIDLTETVTVFGRIMQRLSSIVSFFTSFSVIAGVLI HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IISSVFATRYARIQEAVYFTILGARRAFVLKVFAAENLVLGLVSGVIALLISQLGSLIIC HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE RKGLDMTYVPYLGESLLLLLATTLLVMFVGLAVALPILYQKPVAFLREQSEE ECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVNARFLLRQVTGAKRQCTVFVLCVALSMITLVSLGSFRESVESSLLRDAQSLHSADIII CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE KSHSPVPPNLERERAVLKDRREIRSARYWEFYSVVQKPSADASLLCNIKVVEPGYPFYGT ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEE VRLASGRPFEKVLSPGSLVVEQALLDRLQLKIGDPLRIGNAVLTVKDVVVQEPDRPVNFF EEECCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEHHHHHCCCCCCEEEE ALGPRVFVAAADRDALALIGKGSRIEHVTLVKVTDPPRLEQVASELRAATDNDGRVRVET EECCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEE YKNAGSRVKRFFDNLLFFLNLSGIFTLLLSGFGIQSTLFALLKEQERTIAVMKALGARSR HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH FIIGHFLGLTLILGLFGTVAGLAGSFALQRYLPALFSGLIPAQVTLQVSTSAIFQGMAIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHH LLVVLLFTALPLYRLKEVKPKAIFGKEETAALWNRSTWIIASLGALFFLSMVLIRLRDLK HHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH TGLYFMLSLVSLILISYLLAWVTLHFLKRKQPKNLALRQALKGLFRPHNASLSIMVTLSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHH AFAVIFAINLVEKNLDATFIESFPPGAPNVFFIDIQPGQREAFGRMIGPGASFYPIIKGN HHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEECCC VTAVNEIPLDQAQERKSRGDNLAREMNLTYREYLLPDERIESGETLFRKDWTEPQVSVLD EEEEECCCCCHHHHHHHHCCHHHHHHCCHHHHHCCCHHHHCCCCHHHHCCCCCHHHHHHH TVVKMHDMKVGDRVSFRVQGLPITARVSSVRTRTSSGFSPFFYFVFQESVLSQAPQTFFA HHHHHHCCCCCCCEEEEEECCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHH AVRVDKAGISALQNRVVSAFPNVSVIDLTETVTVFGRIMQRLSSIVSFFTSFSVIAGVLI HHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IISSVFATRYARIQEAVYFTILGARRAFVLKVFAAENLVLGLVSGVIALLISQLGSLIIC HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE RKGLDMTYVPYLGESLLLLLATTLLVMFVGLAVALPILYQKPVAFLREQSEE ECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]