| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118445
Identifier: 197118445
GI number: 197118445
Start: 2376834
End: 2378792
Strand: Direct
Name: 197118445
Synonym: Gbem_2063
Alternate gene names: NA
Gene position: 2376834-2378792 (Clockwise)
Preceding gene: 197118444
Following gene: 197118446
Centisome position: 51.5
GC content: 66.41
Gene sequence:
>1959_bases ATGAGTTTGAAACATTTGCTAAAGGTAGCTTTCGCGGCTGTTATGACGATGGCATTGGCCTCGTGCGGTGGCGGCGGAGG CGGCGGGGGGGGCGAGCCGCAGCTGACCAGCATGGGGGGAGCGTTGCAGGGGAGATCCCTGGCCCTGACCAATAGCGTGA CCTCTTTCGCCGGTAGCGCCGGTTCCACCGACGGCGCTGCGTCGCAGGCGCGATTCAGCATTCCCGGCGACGTCGCCAGC GACGGAACCAGTCTCTACGTCGTCGACACCGGCAACAGCGTCATCCGCAAGGTCGTCCTTGCCACCGGGGCCACGTCGAC GGTCGCAGGGCTTGCGGGGATCACCGGCTCGGGCGACGGCACCGGTGCTGTCGCGAGGTTCAACTACCCCTCCGGCATTG CCTTGAGCAGCGACAACTCCACGCTGTACGTCAGCGACACCGGCAACAACACCATCCGCAGCATAAACGTCGCTACCGGC GCCGTGACCACCCTGGCCGGTACTGCGGGGGTCGTAGGTTCCACTAACGGCACCGGGGGGGCGGCCAGGTTCAGCTCCCC CTCAGGCGTCGCCACCGACGGGGCCAACCTTTACGTCGCCGACAGCCTCAACCATCGCGTCCGCAAGATCGTCCTCGCCT CGGCTGCGGTCACAACCCTTGCCGGCAGCGGTCTGCAGGATTTCGCCGACGGCACCGGCATAGCTGCCAGCTTCAATTCG CCGCGCGGCATCGCCACCGACGGTGTCTCGCTCTATCTCGCGGATCAGGGCAATTCCGCGGTCAGGAGGATCATCATCGC GACCGGTGTGGTCTCTACCTTGGTGCAGCCTGCCTCCGGCATAGAGTCGCCGGCCGGCATCGCGACCGACGGGACCAGCG TTTTCGTCACCGACCTCGAGAGGAACAACCTGCGCAAGGTGGACATCGCCACCCAGGCAGTATCTACCCTGGCAGGCGAC GGTGGTGGGAGCCCGGGAAGCACCGACGCGGTGGGGGGCGCGGCCCGCTTCAGCGCCCCTGCCGGCTTGGTTTTGAACGC AGGCGTACTCTACGTAGCCGACACAGGAAACGATCTGCTGCGCAAGGTAGCCGTTGCCACCGGGGCCAGCTCCACCCTCG CCGGGACAGTGGGGTCCGCCGACGGCGTAGGGGTCGCGGCTGCCTTCACCTCTCCCTACGACCTGACCACCGACGGCAGA AACGTCTATGTAGCCGATACCAACAACCACACGGTGAGGCAGATCTCCATCGCCACGGGTGCAGTGACCACGCTGGCCGG AACCCCCGACCGCGCAGGCTCCGGCGACGGCACCGGCGCCGCCGCCTCCTTCAGATTCCCAAGCGGCCTCACCACCGACG GCACCAACCTCTTCGTCTCCGACACCGGCAACAACACGGTCAGGAAGATCGTCATCGCCACCGGAGCCGTTTCCACGCTG GCCGGTACGGCCGGGGCCACCGGTTCGGCCGACGGTGCCGGGAGCGCGGCGAGGTTCCATTCCCCCAACGGCCTCACCAC CGACGGGACCAACCTCTACGTTGCCGACAGCGGGAACAACGCCATCAGGAAGATCGTTATCGCCACCGGCGCGGTCTCGA CCGCGGTGGCATCCTCCGCGGGCTTAAGTTCGCCCTACGGCGTCACCACCGACGGCACCACCCTATTCATCACCGACAGC GGCAACCACAGGATCTGCAAGTTCACATTGGCAGGCTCCGCCTTCTCCTCCTTGACGGTTACCGGCGCTGCCTTCAACCT TCCCAGCGGCATCACCACCGACGGCATCAGCCTCTTCGTCACCGACGCGGCCAACGGTTCGGTCAGCAGGATCGCCATTG CCACCGGCGTCGCCGGAGCCGTCGTCACCGGGCTCAGGAACCCCAACGGCATCACCACCGACGGCGTCACGCTCTACGTC GCCGATGCGCACGACAACACCGTGATCAGGGTGCACTGA
Upstream 100 bases:
>100_bases TTTAGCGACTGGCTGTCGAGCGAAAATCAGGTTGCTGATAGTTACGCAACGAACCTTTTGTTGCCGGCAGATGAACCATT AACAGGAAGTGGAGGTAAGA
Downstream 100 bases:
>100_bases TGCGATGCTTCCTCATTTTAGTTGCGGTATTGCTCGCGTCGGCTACGGCCCACGCGGCCGAAGCTCTCTCCACCCCGAAG GAGCGGACCAGCTACGCCAT
Product: lipoprotein
Products: NA
Alternate protein names: NHL Repeat-Containing Protein; Serine/Threonine Protein Kinase; NHL Repeat Protein; YD Repeat Protein; Lipoprotein; Redoxin Domain Protein; Hemagglutinin/Hemolysin-Related Protein; Redoxin Family; PKD Domain Containing Protein; SMP-30/Gluconolaconase/LRE Domain-Containing Protein; Copper Amine Oxidase Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; Fibronectin Type III Domain Protein; Ascorbate-Dependent Monooxygenase; Redoxin Domain-Containing Protein; Leucine-Rich Repeat-Containing Protein; Ig Domain-Containing Protein
Number of amino acids: Translated: 652; Mature: 651
Protein sequence:
>652_residues MSLKHLLKVAFAAVMTMALASCGGGGGGGGGEPQLTSMGGALQGRSLALTNSVTSFAGSAGSTDGAASQARFSIPGDVAS DGTSLYVVDTGNSVIRKVVLATGATSTVAGLAGITGSGDGTGAVARFNYPSGIALSSDNSTLYVSDTGNNTIRSINVATG AVTTLAGTAGVVGSTNGTGGAARFSSPSGVATDGANLYVADSLNHRVRKIVLASAAVTTLAGSGLQDFADGTGIAASFNS PRGIATDGVSLYLADQGNSAVRRIIIATGVVSTLVQPASGIESPAGIATDGTSVFVTDLERNNLRKVDIATQAVSTLAGD GGGSPGSTDAVGGAARFSAPAGLVLNAGVLYVADTGNDLLRKVAVATGASSTLAGTVGSADGVGVAAAFTSPYDLTTDGR NVYVADTNNHTVRQISIATGAVTTLAGTPDRAGSGDGTGAAASFRFPSGLTTDGTNLFVSDTGNNTVRKIVIATGAVSTL AGTAGATGSADGAGSAARFHSPNGLTTDGTNLYVADSGNNAIRKIVIATGAVSTAVASSAGLSSPYGVTTDGTTLFITDS GNHRICKFTLAGSAFSSLTVTGAAFNLPSGITTDGISLFVTDAANGSVSRIAIATGVAGAVVTGLRNPNGITTDGVTLYV ADAHDNTVIRVH
Sequences:
>Translated_652_residues MSLKHLLKVAFAAVMTMALASCGGGGGGGGGEPQLTSMGGALQGRSLALTNSVTSFAGSAGSTDGAASQARFSIPGDVAS DGTSLYVVDTGNSVIRKVVLATGATSTVAGLAGITGSGDGTGAVARFNYPSGIALSSDNSTLYVSDTGNNTIRSINVATG AVTTLAGTAGVVGSTNGTGGAARFSSPSGVATDGANLYVADSLNHRVRKIVLASAAVTTLAGSGLQDFADGTGIAASFNS PRGIATDGVSLYLADQGNSAVRRIIIATGVVSTLVQPASGIESPAGIATDGTSVFVTDLERNNLRKVDIATQAVSTLAGD GGGSPGSTDAVGGAARFSAPAGLVLNAGVLYVADTGNDLLRKVAVATGASSTLAGTVGSADGVGVAAAFTSPYDLTTDGR NVYVADTNNHTVRQISIATGAVTTLAGTPDRAGSGDGTGAAASFRFPSGLTTDGTNLFVSDTGNNTVRKIVIATGAVSTL AGTAGATGSADGAGSAARFHSPNGLTTDGTNLYVADSGNNAIRKIVIATGAVSTAVASSAGLSSPYGVTTDGTTLFITDS GNHRICKFTLAGSAFSSLTVTGAAFNLPSGITTDGISLFVTDAANGSVSRIAIATGVAGAVVTGLRNPNGITTDGVTLYV ADAHDNTVIRVH >Mature_651_residues SLKHLLKVAFAAVMTMALASCGGGGGGGGGEPQLTSMGGALQGRSLALTNSVTSFAGSAGSTDGAASQARFSIPGDVASD GTSLYVVDTGNSVIRKVVLATGATSTVAGLAGITGSGDGTGAVARFNYPSGIALSSDNSTLYVSDTGNNTIRSINVATGA VTTLAGTAGVVGSTNGTGGAARFSSPSGVATDGANLYVADSLNHRVRKIVLASAAVTTLAGSGLQDFADGTGIAASFNSP RGIATDGVSLYLADQGNSAVRRIIIATGVVSTLVQPASGIESPAGIATDGTSVFVTDLERNNLRKVDIATQAVSTLAGDG GGSPGSTDAVGGAARFSAPAGLVLNAGVLYVADTGNDLLRKVAVATGASSTLAGTVGSADGVGVAAAFTSPYDLTTDGRN VYVADTNNHTVRQISIATGAVTTLAGTPDRAGSGDGTGAAASFRFPSGLTTDGTNLFVSDTGNNTVRKIVIATGAVSTLA GTAGATGSADGAGSAARFHSPNGLTTDGTNLYVADSGNNAIRKIVIATGAVSTAVASSAGLSSPYGVTTDGTTLFITDSG NHRICKFTLAGSAFSSLTVTGAAFNLPSGITTDGISLFVTDAANGSVSRIAIATGVAGAVVTGLRNPNGITTDGVTLYVA DAHDNTVIRVH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI42476013, Length=383, Percent_Identity=27.6762402088773, Blast_Score=107, Evalue=3e-23, Organism=Drosophila melanogaster, GI116007528, Length=360, Percent_Identity=28.6111111111111, Blast_Score=83, Evalue=6e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63446; Mature: 63314
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKHLLKVAFAAVMTMALASCGGGGGGGGGEPQLTSMGGALQGRSLALTNSVTSFAGSA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHCCCC GSTDGAASQARFSIPGDVASDGTSLYVVDTGNSVIRKVVLATGATSTVAGLAGITGSGDG CCCCCCCCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC TGAVARFNYPSGIALSSDNSTLYVSDTGNNTIRSINVATGAVTTLAGTAGVVGSTNGTGG CCEEEEECCCCCEEEECCCCEEEEEECCCCEEEEEEEECCCEEHHCCCCCCEECCCCCCC AARFSSPSGVATDGANLYVADSLNHRVRKIVLASAAVTTLAGSGLQDFADGTGIAASFNS EEECCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCC PRGIATDGVSLYLADQGNSAVRRIIIATGVVSTLVQPASGIESPAGIATDGTSVFVTDLE CCCEEECCEEEEEECCCCHHHHHEEHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEECC RNNLRKVDIATQAVSTLAGDGGGSPGSTDAVGGAARFSAPAGLVLNAGVLYVADTGNDLL CCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCHHHH RKVAVATGASSTLAGTVGSADGVGVAAAFTSPYDLTTDGRNVYVADTNNHTVRQISIATG HHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCEECCCCCEEEEEECCCCEEEEEEEECC AVTTLAGTPDRAGSGDGTGAAASFRFPSGLTTDGTNLFVSDTGNNTVRKIVIATGAVSTL CEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHH AGTAGATGSADGAGSAARFHSPNGLTTDGTNLYVADSGNNAIRKIVIATGAVSTAVASSA CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHCC GLSSPYGVTTDGTTLFITDSGNHRICKFTLAGSAFSSLTVTGAAFNLPSGITTDGISLFV CCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEE TDAANGSVSRIAIATGVAGAVVTGLRNPNGITTDGVTLYVADAHDNTVIRVH EECCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEC >Mature Secondary Structure SLKHLLKVAFAAVMTMALASCGGGGGGGGGEPQLTSMGGALQGRSLALTNSVTSFAGSA CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHCCCC GSTDGAASQARFSIPGDVASDGTSLYVVDTGNSVIRKVVLATGATSTVAGLAGITGSGDG CCCCCCCCCEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHCCCCCCCCC TGAVARFNYPSGIALSSDNSTLYVSDTGNNTIRSINVATGAVTTLAGTAGVVGSTNGTGG CCEEEEECCCCCEEEECCCCEEEEEECCCCEEEEEEEECCCEEHHCCCCCCEECCCCCCC AARFSSPSGVATDGANLYVADSLNHRVRKIVLASAAVTTLAGSGLQDFADGTGIAASFNS EEECCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCC PRGIATDGVSLYLADQGNSAVRRIIIATGVVSTLVQPASGIESPAGIATDGTSVFVTDLE CCCEEECCEEEEEECCCCHHHHHEEHHHHHHHHHHCCCCCCCCCCCEEECCCEEEEEECC RNNLRKVDIATQAVSTLAGDGGGSPGSTDAVGGAARFSAPAGLVLNAGVLYVADTGNDLL CCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEECCHHHH RKVAVATGASSTLAGTVGSADGVGVAAAFTSPYDLTTDGRNVYVADTNNHTVRQISIATG HHHHHHCCCCCCEEECCCCCCCCEEEEEECCCCEECCCCCEEEEEECCCCEEEEEEEECC AVTTLAGTPDRAGSGDGTGAAASFRFPSGLTTDGTNLFVSDTGNNTVRKIVIATGAVSTL CEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECCCHHHH AGTAGATGSADGAGSAARFHSPNGLTTDGTNLYVADSGNNAIRKIVIATGAVSTAVASSA CCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHCC GLSSPYGVTTDGTTLFITDSGNHRICKFTLAGSAFSSLTVTGAAFNLPSGITTDGISLFV CCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCCEEEEE TDAANGSVSRIAIATGVAGAVVTGLRNPNGITTDGVTLYVADAHDNTVIRVH EECCCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA