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The map label for this gene is yjiM [H]

Identifier: 197118422

GI number: 197118422

Start: 2346928

End: 2348133

Strand: Direct

Name: yjiM [H]

Synonym: Gbem_2040

Alternate gene names: 197118422

Gene position: 2346928-2348133 (Clockwise)

Preceding gene: 197118421

Following gene: 197118423

Centisome position: 50.85

GC content: 59.54

Gene sequence:

>1206_bases
ATGATAGAACCGCAAACTGCCGGCGGCACGAAGACTGCGGCATTCGAAGAGATAGCCACCCTGCGCGAGAGAAATGCGCT
TGCCCTCAAGGAAGCGAAGGAGTCCGGCCTCAAGGTGGTGGGGACCTACTGTCTCTACTCGCCCACCGAGCTCATAGTCG
CTGCAGGAGCCATTCCCGTCTCCTTGTGCGGCACCAGCCAGACCCCGATCGCTGCTGCGGAAAAGGTGCTGCCGCGCTCT
CTTTGCCCGCTGATCAAGTCCAGCTACGGATTTGCGATCACCGATACCTGTCCTTTCTTCCATTTCTCGGACATGCTGGT
CGCAGAGACGACCTGCGACGGGAAAAAGAAGATGTATGAGCTGCTCGGGGAGATGAAGCCGCTCCATCTTATGCAGCTGC
CGCAGATCCAGGACGAGGCTGCGCTCGACTACTGGATGGTCGAGCTGAAGCGGCTGATCGCTCGCCTGGAAGGGGAGTTC
GGGGTGGAGATCACGCGCGAGCGTCTTGCCTCGGCCATCGAGCTGGTGAACGAGGAGCGCCGCTCCCTTCAGGCGCTGCA
GGATGTCAGCAAGCTGAAGCCCACCCCCATCAGCGGGAGCGACCTCCTTACCGTCTTGCACAACCGCGGTTTCTGCGTCG
ACAAAGAGCAGGCCATCGAACTGCTGGACCGCTTGACCGCAGAGCTGGCGGAAAGGTCGGGAAAAGGGATTTCTCCTTAT
GATGAACGGACGCCTCGGATACTTCTGACCGGCGTCCCGGTAGGGCTTGGTTCGGACAAGGTGGTGCGGCTGATCGAAGA
GTCCGGCGGCTGCGTGGTCTGCTTCGAGAGTTGTGGCGGGTACAAGAAGGTGGACCGGGTTGAGGCGACGGACGACCCCT
TGCGTGCCATCGCCGAAAAATACCTGAGGATTCCCTGCTCCTGCATGTCACCCAACCATAGGCGGCTGGAGCTTCTGGAT
CGACTGGCGGACGAGTTCCAGGTTGACGGGATCATCGACCTTACCTGGCAGGGATGCCACACCTACAACATAGAGTCGTA
TGCGGTGAAAAGGCATCTGCAGCAGGGAAGCCAGCTCCCGTTTCTGCAGATAGAGACCGATTACTCCGAGTCCGACACCC
AGCAGCTCAAGGTAAGAATAGAGGCGTTCCTGGAGATGATCGGCAGGCGCCGTGCAAAGCTTGGAAATGCCAAGGCCAAG
GTTTAG

Upstream 100 bases:

>100_bases
CCATCGGCGCGGGGCTAGGTGTCGAGATGCGCGTCCCCGCCGCCCCCCAGTTCGTCGGCGCACTGGGAGCTGCACTTTTG
GGCTTTGAAGGAGGAACTGC

Downstream 100 bases:

>100_bases
AAGTACCAAGACTAGTTTCGTATCAAAGGAGAAGAAATGAAAAGGTTGTTGCTGTCGATGCTTGCACTCTCACTCTGCGT
TACTCCGGCTGCCTGGGCTA

Product: (R)-2-hydroxyglutaryl-CoA dehydratase D component-like protein YjiM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MIEPQTAGGTKTAAFEEIATLRERNALALKEAKESGLKVVGTYCLYSPTELIVAAGAIPVSLCGTSQTPIAAAEKVLPRS
LCPLIKSSYGFAITDTCPFFHFSDMLVAETTCDGKKKMYELLGEMKPLHLMQLPQIQDEAALDYWMVELKRLIARLEGEF
GVEITRERLASAIELVNEERRSLQALQDVSKLKPTPISGSDLLTVLHNRGFCVDKEQAIELLDRLTAELAERSGKGISPY
DERTPRILLTGVPVGLGSDKVVRLIEESGGCVVCFESCGGYKKVDRVEATDDPLRAIAEKYLRIPCSCMSPNHRRLELLD
RLADEFQVDGIIDLTWQGCHTYNIESYAVKRHLQQGSQLPFLQIETDYSESDTQQLKVRIEAFLEMIGRRRAKLGNAKAK
V

Sequences:

>Translated_401_residues
MIEPQTAGGTKTAAFEEIATLRERNALALKEAKESGLKVVGTYCLYSPTELIVAAGAIPVSLCGTSQTPIAAAEKVLPRS
LCPLIKSSYGFAITDTCPFFHFSDMLVAETTCDGKKKMYELLGEMKPLHLMQLPQIQDEAALDYWMVELKRLIARLEGEF
GVEITRERLASAIELVNEERRSLQALQDVSKLKPTPISGSDLLTVLHNRGFCVDKEQAIELLDRLTAELAERSGKGISPY
DERTPRILLTGVPVGLGSDKVVRLIEESGGCVVCFESCGGYKKVDRVEATDDPLRAIAEKYLRIPCSCMSPNHRRLELLD
RLADEFQVDGIIDLTWQGCHTYNIESYAVKRHLQQGSQLPFLQIETDYSESDTQQLKVRIEAFLEMIGRRRAKLGNAKAK
V
>Mature_401_residues
MIEPQTAGGTKTAAFEEIATLRERNALALKEAKESGLKVVGTYCLYSPTELIVAAGAIPVSLCGTSQTPIAAAEKVLPRS
LCPLIKSSYGFAITDTCPFFHFSDMLVAETTCDGKKKMYELLGEMKPLHLMQLPQIQDEAALDYWMVELKRLIARLEGEF
GVEITRERLASAIELVNEERRSLQALQDVSKLKPTPISGSDLLTVLHNRGFCVDKEQAIELLDRLTAELAERSGKGISPY
DERTPRILLTGVPVGLGSDKVVRLIEESGGCVVCFESCGGYKKVDRVEATDDPLRAIAEKYLRIPCSCMSPNHRRLELLD
RLADEFQVDGIIDLTWQGCHTYNIESYAVKRHLQQGSQLPFLQIETDYSESDTQQLKVRIEAFLEMIGRRRAKLGNAKAK
V

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ0007 [H]

Homologues:

Organism=Escherichia coli, GI87082427, Length=377, Percent_Identity=49.3368700265252, Blast_Score=375, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 44555; Mature: 44555

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEPQTAGGTKTAAFEEIATLRERNALALKEAKESGLKVVGTYCLYSPTELIVAAGAIPV
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHCCCHHHHHCCCCCEE
SLCGTSQTPIAAAEKVLPRSLCPLIKSSYGFAITDTCPFFHFSDMLVAETTCDGKKKMYE
EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCHHEEECCCCHHHHHHH
LLGEMKPLHLMQLPQIQDEAALDYWMVELKRLIARLEGEFGVEITRERLASAIELVNEER
HHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RSLQALQDVSKLKPTPISGSDLLTVLHNRGFCVDKEQAIELLDRLTAELAERSGKGISPY
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
DERTPRILLTGVPVGLGSDKVVRLIEESGGCVVCFESCGGYKKVDRVEATDDPLRAIAEK
CCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHH
YLRIPCSCMSPNHRRLELLDRLADEFQVDGIIDLTWQGCHTYNIESYAVKRHLQQGSQLP
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHHHHHHHCCCCCC
FLQIETDYSESDTQQLKVRIEAFLEMIGRRRAKLGNAKAKV
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIEPQTAGGTKTAAFEEIATLRERNALALKEAKESGLKVVGTYCLYSPTELIVAAGAIPV
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEHHHHCCCHHHHHCCCCCEE
SLCGTSQTPIAAAEKVLPRSLCPLIKSSYGFAITDTCPFFHFSDMLVAETTCDGKKKMYE
EECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCHHEEECCCCHHHHHHH
LLGEMKPLHLMQLPQIQDEAALDYWMVELKRLIARLEGEFGVEITRERLASAIELVNEER
HHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
RSLQALQDVSKLKPTPISGSDLLTVLHNRGFCVDKEQAIELLDRLTAELAERSGKGISPY
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
DERTPRILLTGVPVGLGSDKVVRLIEESGGCVVCFESCGGYKKVDRVEATDDPLRAIAEK
CCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHCCCCCCCHHHHHHHHH
YLRIPCSCMSPNHRRLELLDRLADEFQVDGIIDLTWQGCHTYNIESYAVKRHLQQGSQLP
HHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCHHHHHHHHHHCCCCCC
FLQIETDYSESDTQQLKVRIEAFLEMIGRRRAKLGNAKAKV
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]