| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118325
Identifier: 197118325
GI number: 197118325
Start: 2246069
End: 2246659
Strand: Direct
Name: 197118325
Synonym: Gbem_1942
Alternate gene names: NA
Gene position: 2246069-2246659 (Clockwise)
Preceding gene: 197118324
Following gene: 197118326
Centisome position: 48.67
GC content: 60.07
Gene sequence:
>591_bases ATGAAAAAAGTAAGGTTATTGGCGCTGGGGGCTGTCTTCGCGGTTTTTGCCGGGTGCGCAGGGAGTCCGCAAGCGATGCT GAAACAGGAGATAGTAAAAAGCGGTGAAGTCTTTTGGGAAATGGGCAAGGGAGGGGGGGCTCCGGAAGGGTATGCCGATC TCACCGTCACCGCTTCCATAAAGACCCACAAAGAGCGCGCGTCCCTGGTGCGCGACCGCCACGGCAGCGCCGATTACACG CTGCTTCTCTCCATCGACGGGCAGGCGGTGATTGTGACTGGGGAGGCCCGGCCGGAGCGAATGGAAGCCAGCCCGTTTGC ACATTCTGAAGCAGGTAAAGGAGTCCGTTATCTCTTTACCAAGACCCTGCGGTTGCAGGCGGGGACGCACAGAATCGCGC TTTCACTGCCGGAGGATCAGGTTGGAGTGGTGCATGACATCACCTTTGGGAGCGGCAGCGCGAACCAGTTGGTGCTGGAG CCTGTGTACGCGGCAGTAGCCGGAAAGCCGCGCCCGGGCTTTACCGGGGCCACCTCCTTCAAAGAGGGAATCTCGCGGAT GCAGGTTGCGCTCAACGGGACGATGCTGTGA
Upstream 100 bases:
>100_bases AGAGGGAAATTCAAGAGGAAAGCTAGCCGCACAAAAAAAGGGGACAGGCTACTTTTTGAAATCAAAAAGTAGCCTGTCCC CCTTCGAAAAAGGAGCAAGC
Downstream 100 bases:
>100_bases GAGGGTGATAGGCCAGCATGCAAAGCTGGAGCTTTGCCTCGCATCGGGTTCCCAAGCTGGAGCTTGGGAACCAGGGGCAA GGGGGACAGGCTACTTTTTG
Product: lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MKKVRLLALGAVFAVFAGCAGSPQAMLKQEIVKSGEVFWEMGKGGGAPEGYADLTVTASIKTHKERASLVRDRHGSADYT LLLSIDGQAVIVTGEARPERMEASPFAHSEAGKGVRYLFTKTLRLQAGTHRIALSLPEDQVGVVHDITFGSGSANQLVLE PVYAAVAGKPRPGFTGATSFKEGISRMQVALNGTML
Sequences:
>Translated_196_residues MKKVRLLALGAVFAVFAGCAGSPQAMLKQEIVKSGEVFWEMGKGGGAPEGYADLTVTASIKTHKERASLVRDRHGSADYT LLLSIDGQAVIVTGEARPERMEASPFAHSEAGKGVRYLFTKTLRLQAGTHRIALSLPEDQVGVVHDITFGSGSANQLVLE PVYAAVAGKPRPGFTGATSFKEGISRMQVALNGTML >Mature_196_residues MKKVRLLALGAVFAVFAGCAGSPQAMLKQEIVKSGEVFWEMGKGGGAPEGYADLTVTASIKTHKERASLVRDRHGSADYT LLLSIDGQAVIVTGEARPERMEASPFAHSEAGKGVRYLFTKTLRLQAGTHRIALSLPEDQVGVVHDITFGSGSANQLVLE PVYAAVAGKPRPGFTGATSFKEGISRMQVALNGTML
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20758; Mature: 20758
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVRLLALGAVFAVFAGCAGSPQAMLKQEIVKSGEVFWEMGKGGGAPEGYADLTVTASI CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEE KTHKERASLVRDRHGSADYTLLLSIDGQAVIVTGEARPERMEASPFAHSEAGKGVRYLFT HHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE KTLRLQAGTHRIALSLPEDQVGVVHDITFGSGSANQLVLEPVYAAVAGKPRPGFTGATSF EHEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCCHHH KEGISRMQVALNGTML HHHHHHHHHHCCCCCC >Mature Secondary Structure MKKVRLLALGAVFAVFAGCAGSPQAMLKQEIVKSGEVFWEMGKGGGAPEGYADLTVTASI CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEE KTHKERASLVRDRHGSADYTLLLSIDGQAVIVTGEARPERMEASPFAHSEAGKGVRYLFT HHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE KTLRLQAGTHRIALSLPEDQVGVVHDITFGSGSANQLVLEPVYAAVAGKPRPGFTGATSF EHEEEECCCEEEEEECCCCCCCEEEEEECCCCCCCEEEHHHHHHHHCCCCCCCCCCCHHH KEGISRMQVALNGTML HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA