| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is coaD
Identifier: 197118274
GI number: 197118274
Start: 2191004
End: 2191489
Strand: Reverse
Name: coaD
Synonym: Gbem_1891
Alternate gene names: 197118274
Gene position: 2191489-2191004 (Counterclockwise)
Preceding gene: 197118275
Following gene: 197118273
Centisome position: 47.48
GC content: 60.7
Gene sequence:
>486_bases GTGCCCCTGAAGCTGGCTGTATATCCAGGCTCCTTCGATCCCGTAACCTACGGGCATCTCGACATCATCGACCGCGGCCT TAAGATCTTCGACGGCGTCATCGTGGCGGTGGCCCGCAACTCCGAGAAGAACGCGCTCTTCACCGTGCAGGAGAGAATCG AGCTTTTGACCGAGATCCTGAAGGACCGCCCGGAGGCCAGGGTGGAGACTTTCGACGGGCTTTTGGTGGACTACGTGCGG CGCGTCGGCGCCTCCGTCGTCATACGCGGCCTGCGCGCCGTCTCCGACTTCGAGTTCGAGTTCCAGCTGGCCCAGATGAA CCGCAACATCACCCGCGACGTGGAAACGTTGTTCATGATGACTTCCGTCCCTTACAGCTACCTCTCCTCTTCCATAGTTA AGGAGGTAAGCTGCCTGAACGGCCCGGTGGACAAGCTGGTCCCGCCGCTGGTGAAAAGCGCGCTGGACGCGAAATTCAGG GGCTGA
Upstream 100 bases:
>100_bases AAGAGATCCCCCGCAGTTTCGGCAGGCTAACGGAGATCGAGCGACGCGTCTACGGCGACACCGCCCTCTCCTTTTTAACT ATTTCGGACAGAGGTGAAAC
Downstream 100 bases:
>100_bases TCGGCATCGACCAGACGCTGCACCTTCTCGGAGGCCCAAGTGATCAGGAAAGAAATGACCATCAGCGAAATCCTCAGGCG TTACCCCGAAACCCTCCCGG
Product: phosphopantetheine adenylyltransferase
Products: NA
Alternate protein names: Dephospho-CoA pyrophosphorylase; Pantetheine-phosphate adenylyltransferase; PPAT
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MPLKLAVYPGSFDPVTYGHLDIIDRGLKIFDGVIVAVARNSEKNALFTVQERIELLTEILKDRPEARVETFDGLLVDYVR RVGASVVIRGLRAVSDFEFEFQLAQMNRNITRDVETLFMMTSVPYSYLSSSIVKEVSCLNGPVDKLVPPLVKSALDAKFR G
Sequences:
>Translated_161_residues MPLKLAVYPGSFDPVTYGHLDIIDRGLKIFDGVIVAVARNSEKNALFTVQERIELLTEILKDRPEARVETFDGLLVDYVR RVGASVVIRGLRAVSDFEFEFQLAQMNRNITRDVETLFMMTSVPYSYLSSSIVKEVSCLNGPVDKLVPPLVKSALDAKFR G >Mature_160_residues PLKLAVYPGSFDPVTYGHLDIIDRGLKIFDGVIVAVARNSEKNALFTVQERIELLTEILKDRPEARVETFDGLLVDYVRR VGASVVIRGLRAVSDFEFEFQLAQMNRNITRDVETLFMMTSVPYSYLSSSIVKEVSCLNGPVDKLVPPLVKSALDAKFRG
Specific function: Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
COG id: COG0669
COG function: function code H; Phosphopantetheine adenylyltransferase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial CoaD family
Homologues:
Organism=Escherichia coli, GI1790065, Length=156, Percent_Identity=44.2307692307692, Blast_Score=147, Evalue=3e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): COAD_GEOBB (B5EB44)
Other databases:
- EMBL: CP001124 - RefSeq: YP_002138701.1 - ProteinModelPortal: B5EB44 - SMR: B5EB44 - GeneID: 6781881 - GenomeReviews: CP001124_GR - KEGG: gbm:Gbem_1891 - HOGENOM: HBG288308 - OMA: VRQIAAM - ProtClustDB: PRK00168 - GO: GO:0005737 - HAMAP: MF_00151 - InterPro: IPR004821 - InterPro: IPR004820 - InterPro: IPR001980 - InterPro: IPR014729 - Gene3D: G3DSA:3.40.50.620 - PRINTS: PR01020 - TIGRFAMs: TIGR01510 - TIGRFAMs: TIGR00125
Pfam domain/function: PF01467 CTP_transf_2
EC number: =2.7.7.3
Molecular weight: Translated: 18040; Mature: 17909
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLKLAVYPGSFDPVTYGHLDIIDRGLKIFDGVIVAVARNSEKNALFTVQERIELLTEIL CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH KDRPEARVETFDGLLVDYVRRVGASVVIRGLRAVSDFEFEFQLAQMNRNITRDVETLFMM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH TSVPYSYLSSSIVKEVSCLNGPVDKLVPPLVKSALDAKFRG HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure PLKLAVYPGSFDPVTYGHLDIIDRGLKIFDGVIVAVARNSEKNALFTVQERIELLTEIL CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHH KDRPEARVETFDGLLVDYVRRVGASVVIRGLRAVSDFEFEFQLAQMNRNITRDVETLFMM HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHH TSVPYSYLSSSIVKEVSCLNGPVDKLVPPLVKSALDAKFRG HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA