| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is pstS-2 [H]
Identifier: 197118230
GI number: 197118230
Start: 2140840
End: 2141892
Strand: Reverse
Name: pstS-2 [H]
Synonym: Gbem_1847
Alternate gene names: 197118230
Gene position: 2141892-2140840 (Counterclockwise)
Preceding gene: 197118231
Following gene: 197118229
Centisome position: 46.41
GC content: 60.97
Gene sequence:
>1053_bases ATGTGGAACAGACTTGTCAAAAACATCCTCGCATTAGCCCTAGCCATCTCGGCCGCATCCGGTTCGGCCTACGCTGAAAC TGCGCTCACCGGGGCCGGCGCCACTTTCCCCCATCCCCTCTACAGCAAGTGGTTCAGGGACTATCAGGCAGAAGATCCCG GCGTGACCTTCCGCTACGACGCGCAGGGGAGCGGCGAGGGTATCAGGAGGATCCTGGCCCGCGAGGTCGACTTCGGCGCA TCCGACAAGTTTCTCTCCGACGAAGAACTGAATAAAGCGCCCGGCAAGCTGCTGCACATCCCTACCGTGATGGGCGCCGT CGCCGTCACCTACAATATCCCCGGAATCGGTTCCGACCTGAAACTCACGCCGCAGGCGCTTGCCGGGATCTACCTCGGGA AGGTCACCAAATGGAACGACCCGCTCATCGCCAGGGAGAACGCCAAGCTCAAGCTCCCCGCTGAGGATATCGTCGCCGTG CACCGCTCAGACGCCAGCGGCACCACTAGCATCTTTACCGACTACCTGAGCTCGGTGGACCCATCCTGGTCAAGCGGGAT CGGCAAGGGAACGACCGTGGCCTGGCCTGCGGGAATCGGGGCGAAGGGGAGCAGTGCGGTGGTGAAGAAGATAAAGGAGG TTCCCTACAGCATCGGCTACGTGGAGATCGCCTACGCGCTGGAGAACGAGCTGAATGCGGCGGCGCTGAAGAACCGGGCC GGTAAGTTCGTCAGGCCGACCATGCTCTCCACGAGAGCCGCGGCCGTTCAGGGAATGAAAAATCACAAGATGAAAAAGGA TGTGGAATTGGACTACCGCCTGTCCCTGGTGAACCAGCCGGGCAAGGACGCCTACCCTATCGTCGGGCTCACCTGGCTGC TGGTGTACCGTGACCAGCAGGACCCGGTCAAGGGGAGGAAGCTGGTCGAGTTCCTTACCTGGCAGCTGAAAAAGGCCGAG AAGATGACTTCCACGCTGCACTACACCCCGCTCCCCGACACCTGGTCCGCCCAGGTGGAAAAAACCATCAGGAGCATCGC TGTACCGCAGTAA
Upstream 100 bases:
>100_bases GCACATTTTCACACAATACGATCAATGTGGTAACAAAACCGTCACACTGAGCTGCTATGTTTCCTCCGTCAGAATGAAGG GAAAAAGGAGACAGCACATC
Downstream 100 bases:
>100_bases TCGAAAGATGAAAATGCCACGGCAATCGCCGTGGCATTTTCGTTACCGCTCCTATTTAGTTTCCAGCAGGGGACGAGCAG TTTTGAGCCGCGCAGAGATT
Product: phosphate ABC transporter periplasmic phosphate-binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MWNRLVKNILALALAISAASGSAYAETALTGAGATFPHPLYSKWFRDYQAEDPGVTFRYDAQGSGEGIRRILAREVDFGA SDKFLSDEELNKAPGKLLHIPTVMGAVAVTYNIPGIGSDLKLTPQALAGIYLGKVTKWNDPLIARENAKLKLPAEDIVAV HRSDASGTTSIFTDYLSSVDPSWSSGIGKGTTVAWPAGIGAKGSSAVVKKIKEVPYSIGYVEIAYALENELNAAALKNRA GKFVRPTMLSTRAAAVQGMKNHKMKKDVELDYRLSLVNQPGKDAYPIVGLTWLLVYRDQQDPVKGRKLVEFLTWQLKKAE KMTSTLHYTPLPDTWSAQVEKTIRSIAVPQ
Sequences:
>Translated_350_residues MWNRLVKNILALALAISAASGSAYAETALTGAGATFPHPLYSKWFRDYQAEDPGVTFRYDAQGSGEGIRRILAREVDFGA SDKFLSDEELNKAPGKLLHIPTVMGAVAVTYNIPGIGSDLKLTPQALAGIYLGKVTKWNDPLIARENAKLKLPAEDIVAV HRSDASGTTSIFTDYLSSVDPSWSSGIGKGTTVAWPAGIGAKGSSAVVKKIKEVPYSIGYVEIAYALENELNAAALKNRA GKFVRPTMLSTRAAAVQGMKNHKMKKDVELDYRLSLVNQPGKDAYPIVGLTWLLVYRDQQDPVKGRKLVEFLTWQLKKAE KMTSTLHYTPLPDTWSAQVEKTIRSIAVPQ >Mature_350_residues MWNRLVKNILALALAISAASGSAYAETALTGAGATFPHPLYSKWFRDYQAEDPGVTFRYDAQGSGEGIRRILAREVDFGA SDKFLSDEELNKAPGKLLHIPTVMGAVAVTYNIPGIGSDLKLTPQALAGIYLGKVTKWNDPLIARENAKLKLPAEDIVAV HRSDASGTTSIFTDYLSSVDPSWSSGIGKGTTVAWPAGIGAKGSSAVVKKIKEVPYSIGYVEIAYALENELNAAALKNRA GKFVRPTMLSTRAAAVQGMKNHKMKKDVELDYRLSLVNQPGKDAYPIVGLTWLLVYRDQQDPVKGRKLVEFLTWQLKKAE KMTSTLHYTPLPDTWSAQVEKTIRSIAVPQ
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=325, Percent_Identity=41.8461538461538, Blast_Score=252, Evalue=2e-68,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 38138; Mature: 38138
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWNRLVKNILALALAISAASGSAYAETALTGAGATFPHPLYSKWFRDYQAEDPGVTFRYD CHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEC AQGSGEGIRRILAREVDFGASDKFLSDEELNKAPGKLLHIPTVMGAVAVTYNIPGIGSDL CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEHHHHHHHEEEEEECCCCCCCC KLTPQALAGIYLGKVTKWNDPLIARENAKLKLPAEDIVAVHRSDASGTTSIFTDYLSSVD EECHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHHHEEECCCCCCHHHHHHHHHHHCC PSWSSGIGKGTTVAWPAGIGAKGSSAVVKKIKEVPYSIGYVEIAYALENELNAAALKNRA CCHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCHHHHHHHHHC GKFVRPTMLSTRAAAVQGMKNHKMKKDVELDYRLSLVNQPGKDAYPIVGLTWLLVYRDQQ CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHEEEEEEEECCCC DPVKGRKLVEFLTWQLKKAEKMTSTLHYTPLPDTWSAQVEKTIRSIAVPQ CCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure MWNRLVKNILALALAISAASGSAYAETALTGAGATFPHPLYSKWFRDYQAEDPGVTFRYD CHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEC AQGSGEGIRRILAREVDFGASDKFLSDEELNKAPGKLLHIPTVMGAVAVTYNIPGIGSDL CCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCEEEHHHHHHHEEEEEECCCCCCCC KLTPQALAGIYLGKVTKWNDPLIARENAKLKLPAEDIVAVHRSDASGTTSIFTDYLSSVD EECHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHHHEEECCCCCCHHHHHHHHHHHCC PSWSSGIGKGTTVAWPAGIGAKGSSAVVKKIKEVPYSIGYVEIAYALENELNAAALKNRA CCHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHCHHHHHHHHHC GKFVRPTMLSTRAAAVQGMKNHKMKKDVELDYRLSLVNQPGKDAYPIVGLTWLLVYRDQQ CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHEEEEEEEECCCC DPVKGRKLVEFLTWQLKKAEKMTSTLHYTPLPDTWSAQVEKTIRSIAVPQ CCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6321434; 6365894; 7686882; 9278503; 9298646; 2215649; 9228942; 9671506 [H]