| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197118075
Identifier: 197118075
GI number: 197118075
Start: 1954444
End: 1955544
Strand: Direct
Name: 197118075
Synonym: Gbem_1689
Alternate gene names: NA
Gene position: 1954444-1955544 (Clockwise)
Preceding gene: 197118074
Following gene: 197118076
Centisome position: 42.35
GC content: 66.49
Gene sequence:
>1101_bases ATGGGCGCACCACTATCCATCGCCTTCTTCGCATCGAGTCTTGTTTCCGCCTACTGGAACGGCGCCGCCACCTATTACCG CGGCATGGTCAGGGCCCTGGCAGGGCTTGGGCACCGCATCGTCTTTTACGAACCGGACGCCTACGAACGGCAGTCGCACC GGGATATGGAAGACCCAGACTGGGCCACGGTGGTGGTCTACCCGGCCACCGAGTCGGGGGTGATGCGCTCGCTGGAGGCG GCGAAGGGTTCGGACCTGGTCATCAAGGCGAGCGGCGTCGGCGTCTTCGACGAACTTTTGGAGCGCGAGGTGCTGCGGCT CAAGGGGGAGGGGACCCAGGTCGTCTTCTGGGACGTGGACGCGCCTGCCACCCTGGAGCGTATCGCCGAAGACTCGGACG ATCCCTTCCGTGCGCTGATCCCCCAGTACGATCTCGTCCTCACCTATGGCGGCGGCGACCCAATCGTCCGCCGCTACAAA AGCTTCGGCGCGCGCAGCTGCATTCCCATCTACAACGCGCTCGACCCGGATACCCACTTCCCGGTGCACTCCGAGCCGCG CCTGGAGGCAGACCTCTCCTTTTTGGGGAACCGGCTCCCCGACCGGGAGCGGCGGGTCGACGAATTCTTCCTCGCCGTGG CGAAGCGTCTGCCGGAGCGCCGCTTCCTTCTGGCCGGAAGCGGCTGGGACGACAAGGAGAGGTCCGGCAACGTGAAGTAC CTGGGGCATGTGGGGACCGCCGACCATAACGCCTTCAACTGCAGTCCCATGGCGATACTGAACGTGAGCCGCGACGGCAT GGCGAGAAACGGCTTCTCGCCGGCGACCCGTGTCTTCGAGGCAGCCGGTGCCGGCGCCTGCATGATCACCGACCAGTGGG AAGGGGTGGAGCAGTTCTTCGAGCCGGAGCGCGAGATCTACGTCGCCGCCAGCGGCGACGAGGTGGCGGAGATCCTGGAC CGTCTCACTCCGGCGCTGGCCGCGGCGGTCGGTTCGCGGGCCCTGACCCGGGTGCGGGCGCAGCATACCTACGCCCACCG CGCCCGACAGTTCCAGGAGATCTTTTCAGCCGGGAAGCCGTATACCGGGGGGATGCCATGA
Upstream 100 bases:
>100_bases GGCGCGGCACACCTGCGGCCACCGCATAGACGAGCTTTTGCAGATCTGCAGGGAGCTGGGGCTTCCCGCAGATGAATCAT GAACTAGAAAAGGAATGACA
Downstream 100 bases:
>100_bases AGATCGTAATCTTCGGCCTTTCGATCACCTCGTCCTGGGGTAACGGCCACGCCACCACCTACCGCGGCCTTCTGCGCGAG ATGGACCGGCGCGGCCACGA
Product: glycosyltransferase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MGAPLSIAFFASSLVSAYWNGAATYYRGMVRALAGLGHRIVFYEPDAYERQSHRDMEDPDWATVVVYPATESGVMRSLEA AKGSDLVIKASGVGVFDELLEREVLRLKGEGTQVVFWDVDAPATLERIAEDSDDPFRALIPQYDLVLTYGGGDPIVRRYK SFGARSCIPIYNALDPDTHFPVHSEPRLEADLSFLGNRLPDRERRVDEFFLAVAKRLPERRFLLAGSGWDDKERSGNVKY LGHVGTADHNAFNCSPMAILNVSRDGMARNGFSPATRVFEAAGAGACMITDQWEGVEQFFEPEREIYVAASGDEVAEILD RLTPALAAAVGSRALTRVRAQHTYAHRARQFQEIFSAGKPYTGGMP
Sequences:
>Translated_366_residues MGAPLSIAFFASSLVSAYWNGAATYYRGMVRALAGLGHRIVFYEPDAYERQSHRDMEDPDWATVVVYPATESGVMRSLEA AKGSDLVIKASGVGVFDELLEREVLRLKGEGTQVVFWDVDAPATLERIAEDSDDPFRALIPQYDLVLTYGGGDPIVRRYK SFGARSCIPIYNALDPDTHFPVHSEPRLEADLSFLGNRLPDRERRVDEFFLAVAKRLPERRFLLAGSGWDDKERSGNVKY LGHVGTADHNAFNCSPMAILNVSRDGMARNGFSPATRVFEAAGAGACMITDQWEGVEQFFEPEREIYVAASGDEVAEILD RLTPALAAAVGSRALTRVRAQHTYAHRARQFQEIFSAGKPYTGGMP >Mature_365_residues GAPLSIAFFASSLVSAYWNGAATYYRGMVRALAGLGHRIVFYEPDAYERQSHRDMEDPDWATVVVYPATESGVMRSLEAA KGSDLVIKASGVGVFDELLEREVLRLKGEGTQVVFWDVDAPATLERIAEDSDDPFRALIPQYDLVLTYGGGDPIVRRYKS FGARSCIPIYNALDPDTHFPVHSEPRLEADLSFLGNRLPDRERRVDEFFLAVAKRLPERRFLLAGSGWDDKERSGNVKYL GHVGTADHNAFNCSPMAILNVSRDGMARNGFSPATRVFEAAGAGACMITDQWEGVEQFFEPEREIYVAASGDEVAEILDR LTPALAAAVGSRALTRVRAQHTYAHRARQFQEIFSAGKPYTGGMP
Specific function: Unknown
COG id: COG4641
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40451; Mature: 40320
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAPLSIAFFASSLVSAYWNGAATYYRGMVRALAGLGHRIVFYEPDAYERQSHRDMEDPD CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCCCC WATVVVYPATESGVMRSLEAAKGSDLVIKASGVGVFDELLEREVLRLKGEGTQVVFWDVD CEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECC APATLERIAEDSDDPFRALIPQYDLVLTYGGGDPIVRRYKSFGARSCIPIYNALDPDTHF CCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCCCC PVHSEPRLEADLSFLGNRLPDRERRVDEFFLAVAKRLPERRFLLAGSGWDDKERSGNVKY CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE LGHVGTADHNAFNCSPMAILNVSRDGMARNGFSPATRVFEAAGAGACMITDQWEGVEQFF EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHH EPEREIYVAASGDEVAEILDRLTPALAAAVGSRALTRVRAQHTYAHRARQFQEIFSAGKP CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YTGGMP CCCCCC >Mature Secondary Structure GAPLSIAFFASSLVSAYWNGAATYYRGMVRALAGLGHRIVFYEPDAYERQSHRDMEDPD CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCCCC WATVVVYPATESGVMRSLEAAKGSDLVIKASGVGVFDELLEREVLRLKGEGTQVVFWDVD CEEEEEEECCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECC APATLERIAEDSDDPFRALIPQYDLVLTYGGGDPIVRRYKSFGARSCIPIYNALDPDTHF CCHHHHHHHCCCCCCHHHHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCCCC PVHSEPRLEADLSFLGNRLPDRERRVDEFFLAVAKRLPERRFLLAGSGWDDKERSGNVKY CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEE LGHVGTADHNAFNCSPMAILNVSRDGMARNGFSPATRVFEAAGAGACMITDQWEGVEQFF EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCHHHHHHHH EPEREIYVAASGDEVAEILDRLTPALAAAVGSRALTRVRAQHTYAHRARQFQEIFSAGKP CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC YTGGMP CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA